Package psidev.psi.mi.jami.bridges.europubmedcentral

Class EuroPubmedCentralFetcher

java.lang.Object

psidev.psi.mi.jami.bridges.europubmedcentral.EuroPubmedCentralFetcher

All Implemented Interfaces:

PublicationFetcher

public class EuroPubmedCentralFetcher
extends Object
implements PublicationFetcher

Uses the EuroPubmedCentral WSDL SOAP service to fetch publication entries.

Since:

30/07/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
protected static Logger	log	Constant log

Constructor Summary

Constructors

Constructor	Description
EuroPubmedCentralFetcher()	Initiates the EuroPubmedCentral fetcher

Method Summary

Modifier and Type	Method	Description
Publication	fetchByIdentifier(String id, String source)	Uses the identifier to search for a publication and return a completed record.
Collection<Publication>	fetchByIdentifiers(Map<String,Collection<String>> identifiers)	Uses the identifiers to search for publications and return completed records.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static final Logger log

Constant log

Constructor Detail

EuroPubmedCentralFetcher

public EuroPubmedCentralFetcher()
                         throws BridgeFailedException

Initiates the EuroPubmedCentral fetcher

Throws:

BridgeFailedException - if any.

Method Detail

fetchByIdentifier

public Publication fetchByIdentifier(String id,
                                     String source)
                              throws BridgeFailedException

Uses the identifier to search for a publication and return a completed record. Queries the EuroPubmedCentral WSDL service for the meta data. A second query is made to gather Xrefs if the meta data shows they exist.

Specified by:

fetchByIdentifier in interface PublicationFetcher

Parameters:

id - The identifier of the publication to search for.

source - The database that the identifier is from (pubmed, doi, ...).

Returns:

A completed record for the publication or null if no publication could be found.

Throws:

BridgeFailedException - if any.

fetchByIdentifiers

public Collection<Publication> fetchByIdentifiers(Map<String,Collection<String>> identifiers)
                                           throws BridgeFailedException

Uses the identifiers to search for publications and return completed records. Uses the PubMed identifiers to search for publications and return completed records.

Specified by:

fetchByIdentifiers in interface PublicationFetcher

Parameters:

identifiers - The identifiers of the publications to search for per publication identifier source (pubmed, doi, ...).

Returns:

Completed records for the publications.

Throws:

BridgeFailedException - if any.