Package psidev.psi.mi.jami.bridges.ols

Class LazyOntologyTerm

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultCvTerm

psidev.psi.mi.jami.bridges.ols.LazyCvTerm

psidev.psi.mi.jami.bridges.ols.LazyOntologyTerm

All Implemented Interfaces:

CvTerm, OntologyTerm

public class LazyOntologyTerm
extends LazyCvTerm
implements OntologyTerm

A lazy ontology term, which only checks for parents of children when required.

Since:

21/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
protected Logger	log

Fields inherited from interface psidev.psi.mi.jami.model.CvTerm

PSI_MI, PSI_MI_MI, PSI_MOD, PSI_MOD_MI, PSI_PAR

Constructor Summary

Constructors

Constructor	Description
LazyOntologyTerm(uk.ac.ebi.pride.utilities.ols.web.service.client.OLSClient olsClient, String fullName, Xref identityRef, String ontologyName)	Constructor for LazyOntologyTerm.

Method Summary

Modifier and Type	Method	Description
Collection<OntologyTerm>	getChildren()	Getter for the field children.
String	getDefinition()	Getter for the field definition.
Collection<OntologyTerm>	getParents()	Getter for the field parents.
protected void	initialiseDefinition(String description)	initialiseDefinition.
void	setDefinition(String def)	Set the definition
String	toString()

Methods inherited from class psidev.psi.mi.jami.bridges.ols.LazyCvTerm

getAnnotations, getOlsClient, getOntologyName, getOriginalXref, getShortName, getSynonyms, getXrefs, hasLoadedMetadata, hasLoadedXrefs, initialiseMetaData, setShortName

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultCvTerm

clearPropertiesLinkedToIdentifiers, equals, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, hashCode, initialiseAnnotations, initialiseAnnotationsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseSynonyms, initialiseSynonymsWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processRemovedIdentifierEvent, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.CvTerm

getAnnotations, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, getShortName, getSynonyms, getXrefs, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName

Field Detail

log

protected final Logger log

Constructor Detail

LazyOntologyTerm

public LazyOntologyTerm(uk.ac.ebi.pride.utilities.ols.web.service.client.OLSClient olsClient,
                        String fullName,
                        Xref identityRef,
                        String ontologyName)

Constructor for LazyOntologyTerm.

Parameters:

olsClient - a OLSClient object.

fullName - a String object.

identityRef - a Xref object.

ontologyName - a String object.

Method Detail

getDefinition

public String getDefinition()

Getter for the field definition.

Specified by:

getDefinition in interface OntologyTerm

Returns:

a String object.

setDefinition

public void setDefinition(String def)

Set the definition

Specified by:

setDefinition in interface OntologyTerm

Parameters:

def - : definition of the term

getParents

public Collection<OntologyTerm> getParents()

Getter for the field parents.

Specified by:

getParents in interface OntologyTerm

Returns:

a Collection object.

getChildren

public Collection<OntologyTerm> getChildren()

Getter for the field children.

Specified by:

getChildren in interface OntologyTerm

Returns:

a Collection object.

toString

public String toString()

Overrides:

toString in class LazyCvTerm

initialiseDefinition

protected void initialiseDefinition(String description)

initialiseDefinition.

Overrides:

initialiseDefinition in class LazyCvTerm

Parameters:

description - a String object.