Package psidev.psi.mi.jami.bridges.ols

Class LazySource

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultCvTerm

psidev.psi.mi.jami.bridges.ols.LazyCvTerm

psidev.psi.mi.jami.bridges.ols.LazySource

All Implemented Interfaces:

CvTerm, Source

public class LazySource
extends LazyCvTerm
implements Source

A lazy cvTerm which will only fetch metadata when required.

Since:

14/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
protected Logger	log

Fields inherited from interface psidev.psi.mi.jami.model.CvTerm

PSI_MI, PSI_MI_MI, PSI_MOD, PSI_MOD_MI, PSI_PAR

Constructor Summary

Constructors

Constructor	Description
LazySource(uk.ac.ebi.pride.utilities.ols.web.service.client.OLSClient olsClient, String fullName, Xref identityRef, String ontologyName)	Constructor for LazySource.

Method Summary

Modifier and Type	Method	Description
protected void	clearPropertiesLinkedToAnnotations()	clearPropertiesLinkedToAnnotations.
String	getPostalAddress()	Getter for the field postalAddress.
Publication	getPublication()	getPublication.
String	getUrl()	Getter for the field url.
protected void	initialiseAnnotations()	initialiseAnnotations
protected void	processAddedAnnotationEvent(Annotation added)	processAddedAnnotationEvent.
protected void	processRemovedAnnotationEvent(Annotation removed)	processRemovedAnnotationEvent.
void	setPostalAddress(String address)	Set the postal address
void	setPublication(Publication ref)	Set the bibliographical reference
void	setUrl(String url)	Set the URL

Methods inherited from class psidev.psi.mi.jami.bridges.ols.LazyCvTerm

getAnnotations, getOlsClient, getOntologyName, getOriginalXref, getShortName, getSynonyms, getXrefs, hasLoadedMetadata, hasLoadedXrefs, initialiseDefinition, initialiseMetaData, setShortName, toString

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultCvTerm

clearPropertiesLinkedToIdentifiers, equals, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, hashCode, initialiseAnnotationsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseSynonyms, initialiseSynonymsWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processRemovedIdentifierEvent, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.CvTerm

getAnnotations, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getPARIdentifier, getShortName, getSynonyms, getXrefs, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName

Field Detail

log

protected final Logger log

Constructor Detail

LazySource

public LazySource(uk.ac.ebi.pride.utilities.ols.web.service.client.OLSClient olsClient,
                  String fullName,
                  Xref identityRef,
                  String ontologyName)

Constructor for LazySource.

Parameters:

olsClient - a OLSClient object.

fullName - a String object.

identityRef - a Xref object.

ontologyName - a String object.

Method Detail

initialiseAnnotations

protected void initialiseAnnotations()

initialiseAnnotations

Overrides:

initialiseAnnotations in class DefaultCvTerm

getUrl

public String getUrl()

Getter for the field url.

Specified by:

getUrl in interface Source

Returns:

a String object.

setUrl

public void setUrl(String url)

Set the URL

Specified by:

setUrl in interface Source

Parameters:

url - : URL

getPostalAddress

public String getPostalAddress()

Getter for the field postalAddress.

Specified by:

getPostalAddress in interface Source

Returns:

a String object.

setPostalAddress

public void setPostalAddress(String address)

Set the postal address

Specified by:

setPostalAddress in interface Source

Parameters:

address - : postal Address

getPublication

public Publication getPublication()

getPublication.

Specified by:

getPublication in interface Source

Returns:

a Publication object.

setPublication

public void setPublication(Publication ref)

Set the bibliographical reference

Specified by:

setPublication in interface Source

Parameters:

ref - : publication reference

processAddedAnnotationEvent

protected void processAddedAnnotationEvent(Annotation added)

processAddedAnnotationEvent.

Parameters:

added - a Annotation object.

processRemovedAnnotationEvent

protected void processRemovedAnnotationEvent(Annotation removed)

processRemovedAnnotationEvent.

Parameters:

removed - a Annotation object.

clearPropertiesLinkedToAnnotations

protected void clearPropertiesLinkedToAnnotations()

clearPropertiesLinkedToAnnotations.