Package psidev.psi.mi.jami.bridges.ols

Class OlsSourceFetcher

java.lang.Object

psidev.psi.mi.jami.bridges.ols.AbstractOlsFetcher<Source>

psidev.psi.mi.jami.bridges.ols.OlsSourceFetcher

All Implemented Interfaces:

CvTermFetcher<Source>, SourceFetcher

public class OlsSourceFetcher
extends AbstractOlsFetcher<Source>
implements SourceFetcher

Created with IntelliJ IDEA.

Since:

08/05/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Field Summary

Fields inherited from class psidev.psi.mi.jami.bridges.ols.AbstractOlsFetcher

dbMap, olsClient

Constructor Summary

Constructors

Constructor	Description
OlsSourceFetcher()	Constructor for OlsSourceFetcher.

Method Summary

Modifier and Type	Method	Description
protected Source	instantiateCvTerm(String termName, Xref identity, String ontologyName)	instantiateCvTerm.

Methods inherited from class psidev.psi.mi.jami.bridges.ols.AbstractOlsFetcher

createXref, fetchByIdentifier, fetchByIdentifier, fetchByIdentifiers, fetchByIdentifiers, fetchByName, fetchByName, fetchByNames, fetchByNames, initialiseDbMap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.bridges.fetcher.CvTermFetcher

fetchByIdentifier, fetchByIdentifier, fetchByIdentifiers, fetchByIdentifiers, fetchByName, fetchByName, fetchByNames, fetchByNames

Constructor Detail

OlsSourceFetcher

public OlsSourceFetcher()
                 throws BridgeFailedException

Constructor for OlsSourceFetcher.

Throws:

BridgeFailedException - if any.

Method Detail

instantiateCvTerm

protected Source instantiateCvTerm(String termName,
                                   Xref identity,
                                   String ontologyName)

instantiateCvTerm.

Specified by:

instantiateCvTerm in class AbstractOlsFetcher<Source>

Parameters:

termName - a String object.

identity - a Xref object.

ontologyName - a String object.

Returns:

a T object.