Package psidev.psi.mi.jami.bridges.ols.utils

Class OlsUtils

java.lang.Object

psidev.psi.mi.jami.bridges.ols.utils.OlsUtils

public class OlsUtils
extends Object

Utility class which contains global variables

Since:

05/09/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static String	COMMENT_KEY	Constant COMMENT_KEY="comment"
static String	DEFINITION_KEY	Constant DEFINITION_KEY="definition"
static String	EXACT_SYNONYM_KEY	Constant EXACT_SYNONYM_KEY="exact_synonym"
static String	HTTP_DEF	Constant HTTP_DEF="http"
static String	LINE_BREAK	Constant LINE_BREAK="System.getProperty(line.separator)"
static String	META_DATA_SEPARATOR	Constant META_DATA_SEPARATOR="_"
static String	META_XREF_SEPARATOR	Constant META_XREF_SEPARATOR=":"
static String	MI_ALIAS_IDENTIFIER	Constant MI_ALIAS_IDENTIFIER="Alternate label curated by PSI-MI"
static String	MI_SHORTLABEL_IDENTIFIER	Constant MI_SHORTLABEL_IDENTIFIER="Unique short label curated by PSI-MI"
static String	MOD_ALIAS_IDENTIFIER	Constant MOD_ALIAS_IDENTIFIER="Alternate name curated by PSI-MOD"
static String	MOD_SHORTLABEL_IDENTIFIER	Constant MOD_SHORTLABEL_IDENTIFIER="Short label curated by PSI-MOD"
static String	PMID	Constant PMID="PMID"
static String	PMID_APPLICATION	Constant PMID_APPLICATION="PMID for application instance"
static String	QUOTE	Constant QUOTE="""
static String	RESID_IDENTIFIER	Constant RESID_IDENTIFIER="Alternate name from RESID"
static String	RESID_MISNOMER_IDENTIFIER	Constant RESID_MISNOMER_IDENTIFIER="Misnomer tagged alternate name from RES"{trunked}
static String	RESID_NAME_IDENTIFIER	Constant RESID_NAME_IDENTIFIER="Name from RESID"
static String	RESID_SYSTEMATIC_IDENTIFIER	Constant RESID_SYSTEMATIC_IDENTIFIER="Systematic name from RESID"
static String	UNIPROT_FEATURE_IDENTIFIER	Constant UNIPROT_FEATURE_IDENTIFIER="Protein feature description from UniPro"{trunked}
static String	XREF_DEFINITION_KEY	Constant XREF_DEFINITION_KEY="xref_definition"

Constructor Summary

Constructors

Constructor	Description
OlsUtils()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFINITION_KEY

public static final String DEFINITION_KEY

Constant DEFINITION_KEY="definition"

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Constant Field Values

COMMENT_KEY

public static final String COMMENT_KEY

Constant COMMENT_KEY="comment"

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Constant Field Values

EXACT_SYNONYM_KEY

public static final String EXACT_SYNONYM_KEY

Constant EXACT_SYNONYM_KEY="exact_synonym"

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Constant Field Values

XREF_DEFINITION_KEY

public static final String XREF_DEFINITION_KEY

Constant XREF_DEFINITION_KEY="xref_definition"

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Constant Field Values

META_DATA_SEPARATOR

public static final String META_DATA_SEPARATOR

Constant META_DATA_SEPARATOR="_"

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Constant Field Values

META_XREF_SEPARATOR

public static final String META_XREF_SEPARATOR

Constant META_XREF_SEPARATOR=":"

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Constant Field Values

LINE_BREAK

public static final String LINE_BREAK

Constant LINE_BREAK="System.getProperty(line.separator)"

HTTP_DEF

public static final String HTTP_DEF

Constant HTTP_DEF="http"

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Constant Field Values

MI_SHORTLABEL_IDENTIFIER

public static final String MI_SHORTLABEL_IDENTIFIER

Constant MI_SHORTLABEL_IDENTIFIER="Unique short label curated by PSI-MI"

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Constant Field Values

MOD_SHORTLABEL_IDENTIFIER

public static final String MOD_SHORTLABEL_IDENTIFIER

Constant MOD_SHORTLABEL_IDENTIFIER="Short label curated by PSI-MOD"

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Constant Field Values

MI_ALIAS_IDENTIFIER

public static final String MI_ALIAS_IDENTIFIER

Constant MI_ALIAS_IDENTIFIER="Alternate label curated by PSI-MI"

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Constant Field Values

MOD_ALIAS_IDENTIFIER

public static final String MOD_ALIAS_IDENTIFIER

Constant MOD_ALIAS_IDENTIFIER="Alternate name curated by PSI-MOD"

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Constant Field Values

RESID_IDENTIFIER

public static final String RESID_IDENTIFIER

Constant RESID_IDENTIFIER="Alternate name from RESID"

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Constant Field Values

RESID_MISNOMER_IDENTIFIER

public static final String RESID_MISNOMER_IDENTIFIER

Constant RESID_MISNOMER_IDENTIFIER="Misnomer tagged alternate name from RES"{trunked}

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Constant Field Values

RESID_NAME_IDENTIFIER

public static final String RESID_NAME_IDENTIFIER

Constant RESID_NAME_IDENTIFIER="Name from RESID"

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Constant Field Values

RESID_SYSTEMATIC_IDENTIFIER

public static final String RESID_SYSTEMATIC_IDENTIFIER

Constant RESID_SYSTEMATIC_IDENTIFIER="Systematic name from RESID"

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Constant Field Values

UNIPROT_FEATURE_IDENTIFIER

public static final String UNIPROT_FEATURE_IDENTIFIER

Constant UNIPROT_FEATURE_IDENTIFIER="Protein feature description from UniPro"{trunked}

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Constant Field Values

PMID

public static final String PMID

Constant PMID="PMID"

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Constant Field Values

PMID_APPLICATION

public static final String PMID_APPLICATION

Constant PMID_APPLICATION="PMID for application instance"

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Constant Field Values

QUOTE

public static final String QUOTE

Constant QUOTE="""

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Constant Field Values

Constructor Detail

OlsUtils

public OlsUtils()