MIOntologyAccess (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

All Superinterfaces:

psidev.psi.tools.ontology_manager.interfaces.OntologyAccessTemplate<MIOntologyTermI>

All Known Implementing Classes:

AbstractMIOntologyAccess, MILocalOntology, MIOlsOntology
```
public interface MIOntologyAccess
extends psidev.psi.tools.ontology_manager.interfaces.OntologyAccessTemplate<MIOntologyTermI>
```
Extension of OntologyAcessTemplate for jami
Since:
```
11/11/11
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`String`	`getDatabaseIdentifier()`	getDatabaseIdentifier.
`String`	`getDatabaseName()`	getDatabaseName.
`Pattern`	`getDatabaseRegexp()`	getDatabaseRegexp.
`String`	`getOntologyID()`	getOntologyID.
`OntologyTermFetcher`	`getOntologyTermFetcher()`	getOntologyTermFetcher.
`String`	`getParentFromOtherOntology()`	getParentFromOtherOntology.
`Collection<MIOntologyTermI>`	`getRootTerms()`	getRootTerms.

Methods inherited from interface psidev.psi.tools.ontology_manager.interfaces.OntologyAccessTemplate
getAllChildren, getAllParents, getDirectChildren, getDirectParents, getTermForAccession, getValidTerms, isObsolete, isOntologyUpToDate, isUseTermSynonyms, loadOntology, setOntologyDirectory, setUseTermSynonyms

- Method Detail
  - getOntologyID
```
String getOntologyID()
```
    getOntologyID.
    
    Returns:
    
    a String object.
  - getDatabaseIdentifier
```
String getDatabaseIdentifier()
```
    getDatabaseIdentifier.
    
    Returns:
    
    a String object.
  - getParentFromOtherOntology
```
String getParentFromOtherOntology()
```
    getParentFromOtherOntology.
    
    Returns:
    
    a String object.
  - getRootTerms
```
Collection<MIOntologyTermI> getRootTerms()
```
    getRootTerms.
    
    Returns:
    
    a Collection object.
  - getDatabaseRegexp
```
Pattern getDatabaseRegexp()
```
    getDatabaseRegexp.
    
    Returns:
    
    a Pattern object.
  - getOntologyTermFetcher
```
OntologyTermFetcher getOntologyTermFetcher()
```
    getOntologyTermFetcher.
    
    Returns:
    
    a OntologyTermFetcher object.
  - getDatabaseName
```
String getDatabaseName()
```
    getDatabaseName.
    
    Returns:
    
    a String object.