Package psidev.psi.mi.jami.bridges.ontologymanager.impl

Class OntologyTermWrapper

java.lang.Object

psidev.psi.mi.jami.bridges.ontologymanager.impl.OntologyTermWrapper

All Implemented Interfaces:

MIOntologyTermI, psidev.psi.tools.ontology_manager.interfaces.OntologyTermI

public class OntologyTermWrapper
extends Object
implements MIOntologyTermI

Ontology term for PSI-MI JAMI

Since:

01/11/11

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static Pattern	ECO_REGEXP	Constant ECO_REGEXP
static Pattern	MI_REGEXP	Constant MI_REGEXP
static Pattern	MOD_REGEXP	Constant MOD_REGEXP

Constructor Summary

Constructors

Constructor	Description
OntologyTermWrapper(OntologyTerm cv)	Constructor for OntologyTermWrapper.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)
OntologyTerm	getDelegate()	Getter for the field delegate.
Collection<String>	getNameSynonyms()	getNameSynonyms.
String	getObsoleteMessage()	Getter for the field obsoleteMessage.
Set<String>	getPossibleTermsToRemapTo()	Getter for the field possibleTermsToRemapTo.
String	getPreferredName()	getPreferredName.
String	getRemappedTerm()	Getter for the field remappedTerm.
String	getTermAccession()	getTermAccession.
int	hashCode()
void	setNameSynonyms(Collection<String> nameSynonyms)
void	setObsoleteMessage(String obsoleteMessage)	Setter for the field obsoleteMessage.
void	setPreferredName(String preferredName)
void	setRemappedTerm(String remappedTerm)	Setter for the field remappedTerm.
void	setTermAccession(String accession)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

MOD_REGEXP

public static final Pattern MOD_REGEXP

Constant MOD_REGEXP

MI_REGEXP

public static final Pattern MI_REGEXP

Constant MI_REGEXP

ECO_REGEXP

public static final Pattern ECO_REGEXP

Constant ECO_REGEXP

Constructor Detail

OntologyTermWrapper

public OntologyTermWrapper(OntologyTerm cv)

Constructor for OntologyTermWrapper.

Parameters:

cv - a OntologyTerm object.

Method Detail

getTermAccession

public String getTermAccession()

getTermAccession.

Specified by:

getTermAccession in interface psidev.psi.tools.ontology_manager.interfaces.OntologyTermI

Returns:

a String object.

getPreferredName

public String getPreferredName()

getPreferredName.

Specified by:

getPreferredName in interface psidev.psi.tools.ontology_manager.interfaces.OntologyTermI

Returns:

a String object.

setTermAccession

public void setTermAccession(String accession)

Specified by:

setTermAccession in interface psidev.psi.tools.ontology_manager.interfaces.OntologyTermI

setPreferredName

public void setPreferredName(String preferredName)

Specified by:

setPreferredName in interface psidev.psi.tools.ontology_manager.interfaces.OntologyTermI

getNameSynonyms

public Collection<String> getNameSynonyms()

getNameSynonyms.

Specified by:

getNameSynonyms in interface psidev.psi.tools.ontology_manager.interfaces.OntologyTermI

Returns:

a Collection object.

setNameSynonyms

public void setNameSynonyms(Collection<String> nameSynonyms)

Specified by:

setNameSynonyms in interface psidev.psi.tools.ontology_manager.interfaces.OntologyTermI

getObsoleteMessage

public String getObsoleteMessage()

Getter for the field obsoleteMessage.

Specified by:

getObsoleteMessage in interface MIOntologyTermI

Returns:

a String object.

getRemappedTerm

public String getRemappedTerm()

Getter for the field remappedTerm.

Specified by:

getRemappedTerm in interface MIOntologyTermI

Returns:

a String object.

getPossibleTermsToRemapTo

public Set<String> getPossibleTermsToRemapTo()

Getter for the field possibleTermsToRemapTo.

Specified by:

getPossibleTermsToRemapTo in interface MIOntologyTermI

Returns:

a Set object.

getDelegate

public OntologyTerm getDelegate()

Getter for the field delegate.

Specified by:

getDelegate in interface MIOntologyTermI

Returns:

a OntologyTerm object.

setRemappedTerm

public void setRemappedTerm(String remappedTerm)

Setter for the field remappedTerm.

Parameters:

remappedTerm - a String object.

setObsoleteMessage

public void setObsoleteMessage(String obsoleteMessage)

Setter for the field obsoleteMessage.

Parameters:

obsoleteMessage - a String object.

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object