Package psidev.psi.mi.jami.bridges.uniprot.taxonomy

Class UniprotTaxonomyFetcher

java.lang.Object

psidev.psi.mi.jami.bridges.uniprot.taxonomy.UniprotTaxonomyFetcher

All Implemented Interfaces:

OrganismFetcher

public class UniprotTaxonomyFetcher
extends Object
implements OrganismFetcher

Created with IntelliJ IDEA.

Since:

28/06/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UniprotTaxonomyFetcher()

Method Summary

Modifier and Type	Method	Description
Organism	fetchByTaxID(int taxID)	Finds the complete organism record matching the provided TaxID number.
Collection<Organism>	fetchByTaxIDs(Collection<Integer> taxIDs)	Finds the complete organism records matching the provided TaxID numbers.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UniprotTaxonomyFetcher

public UniprotTaxonomyFetcher()

Method Detail

fetchByTaxID

public Organism fetchByTaxID(int taxID)
                      throws BridgeFailedException

Finds the complete organism record matching the provided TaxID number.

Specified by:

fetchByTaxID in interface OrganismFetcher

Parameters:

taxID - The taxID to search for

Returns:

A matching organism, or null if one could not be found.

Throws:

BridgeFailedException - if any.

fetchByTaxIDs

public Collection<Organism> fetchByTaxIDs(Collection<Integer> taxIDs)
                                   throws BridgeFailedException

Finds the complete organism records matching the provided TaxID numbers.

Specified by:

fetchByTaxIDs in interface OrganismFetcher

Parameters:

taxIDs - A collection of taxIDs to search for.

Returns:

A collection of the matching organisms.

Throws:

BridgeFailedException - if any.