UniprotUtils (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.bridges.uniprot.util.UniprotUtils

```
public class UniprotUtils
extends Object
```
Uniprot utils
Since:
```
10/09/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields
Modifier and Type	Field	Description
`static String`	`FEATURE_CHAIN_FIELD`	Constant `FEATURE_CHAIN_FIELD="feature.chain:"`
`static String`	`FEATURE_PEPTIDE_FIELD`	Constant `FEATURE_PEPTIDE_FIELD="feature.peptide:"`
`static String`	`FEATURE_PRO_PEPTIDE_FIELD`	Constant `FEATURE_PRO_PEPTIDE_FIELD="feature.propep:"`
`static Pattern`	`UNIPROT_ISOFORM_REGEX`	Constant `UNIPROT_ISOFORM_REGEX`
`static Pattern`	`UNIPROT_PRO_REGEX`	Constant `UNIPROT_PRO_REGEX`

Constructor Summary

Constructors
Constructor Description

UniprotUtils()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static Organism`	`createOrganismFromEntry(uk.ac.ebi.kraken.interfaces.uniprot.UniProtEntry entity)`	createOrganismFromEntry.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - UNIPROT_PRO_REGEX
```
public static final Pattern UNIPROT_PRO_REGEX
```
    Constant UNIPROT_PRO_REGEX
  - UNIPROT_ISOFORM_REGEX
```
public static final Pattern UNIPROT_ISOFORM_REGEX
```
    Constant UNIPROT_ISOFORM_REGEX
  - FEATURE_CHAIN_FIELD
```
public static final String FEATURE_CHAIN_FIELD
```
    Constant FEATURE_CHAIN_FIELD="feature.chain:"
    
    See Also:
    
    Constant Field Values
  - FEATURE_PEPTIDE_FIELD
```
public static final String FEATURE_PEPTIDE_FIELD
```
    Constant FEATURE_PEPTIDE_FIELD="feature.peptide:"
    
    See Also:
    
    Constant Field Values
  - FEATURE_PRO_PEPTIDE_FIELD
```
public static final String FEATURE_PRO_PEPTIDE_FIELD
```
    Constant FEATURE_PRO_PEPTIDE_FIELD="feature.propep:"
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - UniprotUtils
```
public UniprotUtils()
```
- Method Detail
  - createOrganismFromEntry
```
public static Organism createOrganismFromEntry(uk.ac.ebi.kraken.interfaces.uniprot.UniProtEntry entity)
```
    createOrganismFromEntry.
    
    Parameters:
    
    entity - a UniProtEntry object.
    
    Returns:
    
    a Organism object.