Package psidev.psi.mi.jami.crosslink.extension

Class CsvXref

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultXref

psidev.psi.mi.jami.crosslink.extension.CsvXref

All Implemented Interfaces:

FileSourceContext, Xref

public class CsvXref
extends DefaultXref
implements FileSourceContext

CSV extension for Xref. It contains a FileSourceLocator

Since:

14/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Xref

CHAIN_PARENT, CHAIN_PARENT_MI, CHEBI, CHEBI_MI, COMPLEX_PORTAL, COMPLEX_PORTAL_MI, COMPLEX_PRIMARY, COMPLEX_PRIMARY_MI, DDBJ_EMBL_GENBANK, DDBJ_EMBL_GENBANK_MI, DOI, DOI_MI, ENSEMBL, ENSEMBL_GENOMES, ENSEMBL_GENOMES_MI, ENSEMBL_MI, ENTREZ_GENE, ENTREZ_GENE_MI, GO, GO_MI, IDENTITY, IDENTITY_MI, IMEX, IMEX_MI, IMEX_PRIMARY, IMEX_PRIMARY_MI, INTACT_MI, INTERACTOR_SET_QUALIFIER, INTERACTOR_SET_QUALIFIER_MI, INTERPRO, INTERPRO_MI, ISOFORM_PARENT, ISOFORM_PARENT_MI, METHOD_REFERENCE, METHOD_REFERENCE_MI, PRIMARY, PRIMARY_MI, PUBMED, PUBMED_MI, REFSEQ, REFSEQ_MI, RESID, RESID_MI, SECONDARY, SECONDARY_MI, SEE_ALSO, SEE_ALSO_MI, SO, SO_MI, UNIPROTKB, UNIPROTKB_MI, UNIPROTKB_SWISSPROT, UNIPROTKB_SWISSPROT_MI, UNIPROTKB_TREMBL, UNIPROTKB_TREMBL_MI

Constructor Summary

Constructors

Constructor	Description
CsvXref(CvTerm database, String id)	Constructor for CsvXref.
CsvXref(CvTerm database, String id, String version)	Constructor for CsvXref.
CsvXref(CvTerm database, String id, String version, CvTerm qualifier)	Constructor for CsvXref.
CsvXref(CvTerm database, String id, CvTerm qualifier)	Constructor for CsvXref.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultXref

equals, getDatabase, getId, getQualifier, getVersion, hashCode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

CsvXref

public CsvXref(CvTerm database,
               String id,
               CvTerm qualifier)

Constructor for CsvXref.

Parameters:

database - a CvTerm object.

id - a String object.

qualifier - a CvTerm object.

CsvXref

public CsvXref(CvTerm database,
               String id,
               String version,
               CvTerm qualifier)

Constructor for CsvXref.

Parameters:

database - a CvTerm object.

id - a String object.

version - a String object.

qualifier - a CvTerm object.

CsvXref

public CsvXref(CvTerm database,
               String id,
               String version)

Constructor for CsvXref.

Parameters:

database - a CvTerm object.

id - a String object.

version - a String object.

CsvXref

public CsvXref(CvTerm database,
               String id)

Constructor for CsvXref.

Parameters:

database - a CvTerm object.

id - a String object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultXref

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties