Package psidev.psi.mi.jami.crosslink.io.parser

Class CsvBinaryInteractionEvidenceParser

java.lang.Object

psidev.psi.mi.jami.crosslink.io.parser.AbstractCsvInteractionEvidenceParser<BinaryInteractionEvidence>

psidev.psi.mi.jami.crosslink.io.parser.CsvBinaryInteractionEvidenceParser

All Implemented Interfaces:

com.googlecode.jcsv.reader.CSVEntryParser<BinaryInteractionEvidence>

public class CsvBinaryInteractionEvidenceParser
extends AbstractCsvInteractionEvidenceParser<BinaryInteractionEvidence>

Binary Interaction evidence crosslink CSV parser

Since:

26/08/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CsvBinaryInteractionEvidenceParser()

Method Summary

Modifier and Type	Method	Description
protected BinaryInteractionEvidence	instantiateInteractionEvidence(int linePosition, String bait)	instantiateInteractionEvidence.

Methods inherited from class psidev.psi.mi.jami.crosslink.io.parser.AbstractCsvInteractionEvidenceParser

createCrossLinkFeatureEvidence, createExperimentalParticipantPool, createParticipantEvidence, createParticipantEvidence, createProteinFromNameAndIdentifier, createProteinsFromString, getParserListener, initialiseColumnNames, isStarted, parseCrossLinkingFeatures, parseEntry, parsePositions, processInvalidPosition, processMismatchPeptidePositions, processMismatchProteinPositions, processNoProtein1Error, processProteinIdentifiersError, setParserListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CsvBinaryInteractionEvidenceParser

public CsvBinaryInteractionEvidenceParser()

Method Detail

instantiateInteractionEvidence

protected BinaryInteractionEvidence instantiateInteractionEvidence(int linePosition,
                                                                   String bait)

instantiateInteractionEvidence.

Specified by:

instantiateInteractionEvidence in class AbstractCsvInteractionEvidenceParser<BinaryInteractionEvidence>

Parameters:

linePosition - a int.

bait - a String object.

Returns:

a T object.