Package psidev.psi.mi.jami.crosslink.io.parser

Class CsvInteractionEvidenceParser

java.lang.Object

psidev.psi.mi.jami.crosslink.io.parser.AbstractCsvInteractionEvidenceParser<InteractionEvidence>

psidev.psi.mi.jami.crosslink.io.parser.CsvInteractionEvidenceParser

All Implemented Interfaces:

com.googlecode.jcsv.reader.CSVEntryParser<InteractionEvidence>

public class CsvInteractionEvidenceParser
extends AbstractCsvInteractionEvidenceParser<InteractionEvidence>

Interaction evidence crosslink CSV parser

Since:

26/08/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CsvInteractionEvidenceParser()

Method Summary

Modifier and Type	Method	Description
protected InteractionEvidence	instantiateInteractionEvidence(int linePosition, String bait)	instantiateInteractionEvidence.

Methods inherited from class psidev.psi.mi.jami.crosslink.io.parser.AbstractCsvInteractionEvidenceParser

createCrossLinkFeatureEvidence, createExperimentalParticipantPool, createParticipantEvidence, createParticipantEvidence, createProteinFromNameAndIdentifier, createProteinsFromString, getParserListener, initialiseColumnNames, isStarted, parseCrossLinkingFeatures, parseEntry, parsePositions, processInvalidPosition, processMismatchPeptidePositions, processMismatchProteinPositions, processNoProtein1Error, processProteinIdentifiersError, setParserListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CsvInteractionEvidenceParser

public CsvInteractionEvidenceParser()

Method Detail

instantiateInteractionEvidence

protected InteractionEvidence instantiateInteractionEvidence(int linePosition,
                                                             String bait)

instantiateInteractionEvidence.

Specified by:

instantiateInteractionEvidence in class AbstractCsvInteractionEvidenceParser<InteractionEvidence>

Parameters:

linePosition - a int.

bait - a String object.

Returns:

a T object.