Package psidev.psi.mi.jami.enricher.impl.full

Class FullCuratedPublicationUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<Publication>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalCuratedPublicationEnricher

psidev.psi.mi.jami.enricher.impl.full.FullCuratedPublicationEnricher

psidev.psi.mi.jami.enricher.impl.full.FullCuratedPublicationUpdater

All Implemented Interfaces:

CuratedPublicationEnricher, MIEnricher<Publication>, PublicationEnricher

public class FullCuratedPublicationUpdater
extends FullCuratedPublicationEnricher

Provides full update of Publication. - update full properties as described in FullPublicationUpdater - update released date. If the released date of the publication to enrich is different from the released date of the fetched publication, it will override the released date with the released date of the fetched publication - update curation depth. If the curation depth of the publication to enrich is different from the curation depth of the fetched publication, it will override the curation depth with the curation depth of the fetched publication

Since:

01/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Modifier	Constructor	Description
	FullCuratedPublicationUpdater(PublicationFetcher fetcher)	Constructor for FullCuratedPublicationUpdater.
protected	FullCuratedPublicationUpdater(MinimalCuratedPublicationUpdater minimalPublicationUpdater)	Constructor for FullCuratedPublicationUpdater.

Method Summary

Modifier and Type	Method	Description
Publication	find(Publication publicationToEnrich)	find.
protected MinimalCuratedPublicationUpdater	getMinimalPublicationUpdater()	Getter for the field minimalPublicationUpdater.
PublicationEnricherListener	getPublicationEnricherListener()	getPublicationEnricherListener.
PublicationFetcher	getPublicationFetcher()	getPublicationFetcher.
SourceEnricher	getSourceEnricher()	Getter for the field sourceEnricher.
protected void	processCurationDepth(Publication publicationToEnrich, Publication fetched)	processCurationDepth.
void	processPublication(Publication publicationToEnrich, Publication fetchedPublication)	The strategy for the enrichment of the publication.
protected void	processReleasedDate(Publication publicationToEnrich, Publication fetched)	processReleasedDate.
void	setPublicationEnricherListener(PublicationEnricherListener listener)	setPublicationEnricherListener.
void	setSourceEnricher(SourceEnricher cvTermEnricher)	setSourceEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullCuratedPublicationEnricher

processOtherProperties

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalCuratedPublicationEnricher

enrich, getDelegate, onEnrichedVersionNotFound, processSource

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich, enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich

Constructor Detail

FullCuratedPublicationUpdater

public FullCuratedPublicationUpdater(PublicationFetcher fetcher)

Constructor for FullCuratedPublicationUpdater.

Parameters:

fetcher - a PublicationFetcher object.

FullCuratedPublicationUpdater

protected FullCuratedPublicationUpdater(MinimalCuratedPublicationUpdater minimalPublicationUpdater)

Constructor for FullCuratedPublicationUpdater.

Parameters:

minimalPublicationUpdater - a MinimalCuratedPublicationUpdater object.

Method Detail

processPublication

public void processPublication(Publication publicationToEnrich,
                               Publication fetchedPublication)
                        throws EnricherException

The strategy for the enrichment of the publication. This methods can be overwritten to change the behaviour of the enrichment.

Overrides:

processPublication in class MinimalCuratedPublicationEnricher

Parameters:

publicationToEnrich - The publication which is being enriched.

fetchedPublication - a Publication object.

Throws:

EnricherException - if any.

processCurationDepth

protected void processCurationDepth(Publication publicationToEnrich,
                                    Publication fetched)
                             throws EnricherException

processCurationDepth.

Overrides:

processCurationDepth in class FullCuratedPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processReleasedDate

protected void processReleasedDate(Publication publicationToEnrich,
                                   Publication fetched)
                            throws EnricherException

processReleasedDate.

Overrides:

processReleasedDate in class FullCuratedPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

setSourceEnricher

public void setSourceEnricher(SourceEnricher cvTermEnricher)

setSourceEnricher.

Specified by:

setSourceEnricher in interface CuratedPublicationEnricher

Overrides:

setSourceEnricher in class MinimalCuratedPublicationEnricher

Parameters:

cvTermEnricher - a SourceEnricher object.

setPublicationEnricherListener

public void setPublicationEnricherListener(PublicationEnricherListener listener)

setPublicationEnricherListener.

Specified by:

setPublicationEnricherListener in interface PublicationEnricher

Overrides:

setPublicationEnricherListener in class MinimalCuratedPublicationEnricher

Parameters:

listener - a PublicationEnricherListener object.

getPublicationFetcher

public PublicationFetcher getPublicationFetcher()

getPublicationFetcher.

Specified by:

getPublicationFetcher in interface PublicationEnricher

Overrides:

getPublicationFetcher in class MinimalCuratedPublicationEnricher

Returns:

a PublicationFetcher object.

getSourceEnricher

public SourceEnricher getSourceEnricher()

Getter for the field sourceEnricher.

Specified by:

getSourceEnricher in interface CuratedPublicationEnricher

Overrides:

getSourceEnricher in class MinimalCuratedPublicationEnricher

Returns:

a SourceEnricher object.

getPublicationEnricherListener

public PublicationEnricherListener getPublicationEnricherListener()

getPublicationEnricherListener.

Specified by:

getPublicationEnricherListener in interface PublicationEnricher

Overrides:

getPublicationEnricherListener in class MinimalCuratedPublicationEnricher

Returns:

a PublicationEnricherListener object.

find

public Publication find(Publication publicationToEnrich)
                 throws EnricherException

find.

Overrides:

find in class MinimalCuratedPublicationEnricher

Parameters:

publicationToEnrich - a T object.

Returns:

a T object.

Throws:

EnricherException - if any.

getMinimalPublicationUpdater

protected MinimalCuratedPublicationUpdater getMinimalPublicationUpdater()

Getter for the field minimalPublicationUpdater.

Returns:

a MinimalCuratedPublicationUpdater object.