ComplexExpansionWithJami (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.examples.core.ComplexExpansionWithJami

```
public class ComplexExpansionWithJami
extends Object
```
In this code example, we wil do spoke, matrix and bipartite expansion to explode n-ary interactions in binary interactions. - Spoke expansion: This assumes that all molecules in the complex interact with a single designated molecule, usually the bait. -> interaction evidences: A bait is determined based on experimental role of each participant. Order of select : bait > alternative bait (fluorescent donor, suppressor gene, ..) > alternative bait (enzyme, donor, phosphate donor, electron donor, photon donor) > alphabetical order In case of several baits, the first one in alphabetical order is chosen. There will be as many binary interactions as we have 'preys' -> modelled interactions: A bait is determined only bases on biological role : alternative bait (enzyme, donor, phosphate donor, electron donor, photon donor) > alphabetical order - Matrix expansion: This assumes that all molecules in the complex interact with each other - Bipartite expansion: This assumes that all molecules in the complex interact with a single externally designated entity.
Since:
```
09/02/15
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor Description

ComplexExpansionWithJami()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`protected static Interaction`	`createInteractionWithBait()`	createInteractionWithBait.
`static void`	`main(String[] args)`	main.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ComplexExpansionWithJami
```
public ComplexExpansionWithJami()
```
- Method Detail
  - main
```
public static void main(String[] args)
                 throws Exception
```
    main.
    
    Parameters:
    
    args - an array of String objects.
    
    Throws:
    
    Exception - if any.
  - createInteractionWithBait
```
protected static Interaction createInteractionWithBait()
```
    createInteractionWithBait.
    
    Returns:
    
    a Interaction object.