Package psidev.psi.mi.jami.factory

Class DefaultComplexExpansionFactory

java.lang.Object

psidev.psi.mi.jami.factory.DefaultComplexExpansionFactory

All Implemented Interfaces:

ComplexExpansionFactory

public class DefaultComplexExpansionFactory
extends Object
implements ComplexExpansionFactory

Default implementation of complex expansion

Since:

22/08/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
DefaultComplexExpansionFactory()

Method Summary

Modifier and Type	Method	Description
ComplexExpansionMethod	createBipartiteComplexExpansion(InteractionCategory category)	Create an instance of bipartite complex expansion that suits the interactionCategory
ComplexExpansionMethod	createComplexExpansionMethod(InteractionCategory category, ComplexExpansionType type)	Create an instance of complex expansion that suits the interactionCategory and the ComplexExpansionType
ComplexExpansionMethod<Interaction,BinaryInteraction>	createDefaultComplexExpansion(ComplexExpansionType type)	Create an instance of complex expansion that suits the ComplexExpansionType and can deal with any kind of interactions (modelled, evidence)
ComplexExpansionMethod	createMatrixComplexExpansion(InteractionCategory category)	Create an instance of matrix complex expansion that suits the interactionCategory
ComplexExpansionMethod	createSpokeComplexExpansion(InteractionCategory category)	Create an instance of spoke complex expansion that suits the interactionCategory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DefaultComplexExpansionFactory

public DefaultComplexExpansionFactory()

Method Detail

createComplexExpansionMethod

public ComplexExpansionMethod createComplexExpansionMethod(InteractionCategory category,
                                                           ComplexExpansionType type)

Create an instance of complex expansion that suits the interactionCategory and the ComplexExpansionType

Specified by:

createComplexExpansionMethod in interface ComplexExpansionFactory

Parameters:

category - : the type of interactions to deal with (evidence, modelled, mixed,...)

type - : the type of complex expansiom (spoke, matrix or bipartite)

Returns:

the complexExpansion instance

createDefaultComplexExpansion

public ComplexExpansionMethod<Interaction,BinaryInteraction> createDefaultComplexExpansion(ComplexExpansionType type)

Create an instance of complex expansion that suits the ComplexExpansionType and can deal with any kind of interactions (modelled, evidence)

Specified by:

createDefaultComplexExpansion in interface ComplexExpansionFactory

Parameters:

type - : the type of complex expansiom (spoke, matrix or bipartite)

Returns:

the complexExpansion instance that will deal with any kind of interactions (modelled, evidence, etc.)

createSpokeComplexExpansion

public ComplexExpansionMethod createSpokeComplexExpansion(InteractionCategory category)

Create an instance of spoke complex expansion that suits the interactionCategory

Specified by:

createSpokeComplexExpansion in interface ComplexExpansionFactory

Parameters:

category - : the type of interactions to deal with (evidence, modelled, mixed,...)

Returns:

the spoke complexExpansion instance

createMatrixComplexExpansion

public ComplexExpansionMethod createMatrixComplexExpansion(InteractionCategory category)

Create an instance of matrix complex expansion that suits the interactionCategory

Specified by:

createMatrixComplexExpansion in interface ComplexExpansionFactory

Parameters:

category - : the type of interactions to deal with (evidence, modelled, mixed,...)

Returns:

the matrix complexExpansion instance

createBipartiteComplexExpansion

public ComplexExpansionMethod createBipartiteComplexExpansion(InteractionCategory category)

Create an instance of bipartite complex expansion that suits the interactionCategory

Specified by:

createBipartiteComplexExpansion in interface ComplexExpansionFactory

Parameters:

category - : the type of interactions to deal with (evidence, modelled, mixed,...)

Returns:

the bipartite complexExpansion instance