Package psidev.psi.mi.jami.html

Class LightMIHtmlWriter

java.lang.Object

psidev.psi.mi.jami.html.AbstractMIHtmlWriter<Interaction,Participant,Feature>

psidev.psi.mi.jami.html.LightMIHtmlWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class LightMIHtmlWriter
extends AbstractMIHtmlWriter<Interaction,Participant,Feature>

Writer for light interactions

Since:

06/12/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightMIHtmlWriter()	Constructor for LightMIHtmlWriter.
LightMIHtmlWriter(File file)	Constructor for LightMIHtmlWriter.
LightMIHtmlWriter(OutputStream output)	Constructor for LightMIHtmlWriter.
LightMIHtmlWriter(Writer writer)	Constructor for LightMIHtmlWriter.

Method Summary

Modifier and Type	Method	Description
protected void	writeConfidences(Interaction interaction)	writeConfidences
protected void	writeConfidences(Participant participant)	writeConfidences
protected void	writeCooperativeEffects(Interaction interaction)	writeCooperativeEffects
protected void	writeDetectionMethods(Feature feature)	writeDetectionMethods
protected void	writeExperiment(Interaction interaction)	writeExperiment
protected void	writeExperimentalPreparations(Participant participant)	writeExperimentalPreparations
protected void	writeExperimentalRole(Participant participant)	writeExperimentalRole
protected void	writeExpressedInOrganism(Participant participant)	writeExpressedInOrganism
protected void	writeGeneralProperties(Interaction interaction)	writeGeneralProperties
protected void	writeParameters(Interaction interaction)	writeParameters
protected void	writeParameters(Participant participant)	writeParameters
protected void	writeParticipantIdentificationMethods(Participant participant)	writeParticipantIdentificationMethods

Methods inherited from class psidev.psi.mi.jami.html.AbstractMIHtmlWriter

close, end, flush, getComplexesToWrite, getComplexWriter, getProcessedObjects, getWriter, initialiseContext, reset, setWriteHeader, start, write, write, write, writeCvTerm, writeEndDocument, writeFeature, writeHeader, writeHtmlStyle, writeInteractionAnchor, writeInteractionList, writeInteractor, writeModelledInteraction, writeOrganism, writeParticipant, writeProperty, writePropertyWithQualifier, writerEndBody, writerStartBody, writeStartDocument, writeSubTitle, writeTag

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightMIHtmlWriter

public LightMIHtmlWriter()

Constructor for LightMIHtmlWriter.

LightMIHtmlWriter

public LightMIHtmlWriter(File file)
                  throws IOException

Constructor for LightMIHtmlWriter.

Parameters:

file - a File object.

Throws:

IOException - if any.

LightMIHtmlWriter

public LightMIHtmlWriter(OutputStream output)

Constructor for LightMIHtmlWriter.

Parameters:

output - a OutputStream object.

LightMIHtmlWriter

public LightMIHtmlWriter(Writer writer)

Constructor for LightMIHtmlWriter.

Parameters:

writer - a Writer object.

Method Detail

writeCooperativeEffects

protected void writeCooperativeEffects(Interaction interaction)

writeCooperativeEffects

Specified by:

writeCooperativeEffects in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

interaction - a T object.

writeConfidences

protected void writeConfidences(Interaction interaction)
                         throws IOException

writeConfidences

Specified by:

writeConfidences in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

interaction - a T object.

Throws:

IOException - if any.

writeParameters

protected void writeParameters(Interaction interaction)
                        throws IOException

writeParameters

Specified by:

writeParameters in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

interaction - a T object.

Throws:

IOException - if any.

writeDetectionMethods

protected void writeDetectionMethods(Feature feature)
                              throws IOException

writeDetectionMethods

Specified by:

writeDetectionMethods in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

feature - a F object.

Throws:

IOException - if any.

writeGeneralProperties

protected void writeGeneralProperties(Interaction interaction)
                               throws IOException

writeGeneralProperties

Specified by:

writeGeneralProperties in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

interaction - a T object.

Throws:

IOException - if any.

writeExperiment

protected void writeExperiment(Interaction interaction)
                        throws IOException

writeExperiment

Specified by:

writeExperiment in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

interaction - a T object.

Throws:

IOException - if any.

writeConfidences

protected void writeConfidences(Participant participant)
                         throws IOException

writeConfidences

Specified by:

writeConfidences in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

participant - a P object.

Throws:

IOException - if any.

writeParameters

protected void writeParameters(Participant participant)
                        throws IOException

writeParameters

Specified by:

writeParameters in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

participant - a P object.

Throws:

IOException - if any.

writeExperimentalPreparations

protected void writeExperimentalPreparations(Participant participant)
                                      throws IOException

writeExperimentalPreparations

Specified by:

writeExperimentalPreparations in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

participant - a P object.

Throws:

IOException - if any.

writeExpressedInOrganism

protected void writeExpressedInOrganism(Participant participant)
                                 throws IOException

writeExpressedInOrganism

Specified by:

writeExpressedInOrganism in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

participant - a P object.

Throws:

IOException - if any.

writeExperimentalRole

protected void writeExperimentalRole(Participant participant)
                              throws IOException

writeExperimentalRole

Specified by:

writeExperimentalRole in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

participant - a P object.

Throws:

IOException - if any.

writeParticipantIdentificationMethods

protected void writeParticipantIdentificationMethods(Participant participant)
                                              throws IOException

writeParticipantIdentificationMethods

Specified by:

writeParticipantIdentificationMethods in class AbstractMIHtmlWriter<Interaction,Participant,Feature>

Parameters:

participant - a P object.

Throws:

IOException - if any.