Package psidev.psi.mi.jami.imex.actions

Interface PublicationIdentifierSynchronizer

All Known Implementing Classes:

PublicationIdentifierSynchronizerImpl

public interface PublicationIdentifierSynchronizer

Interface for synchronizing publication identifiers with IMEx central

Since:

29/03/12

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static String	INTERNAL	Constant INTERNAL="jint"

Method Summary

Modifier and Type	Method	Description
ImexCentralClient	getImexCentralClient()	getImexCentralClient.
boolean	isPublicationIdentifierInSyncWithImexCentral(String pubId, String source, ImexPublication imexPublication)	It will look at all identifiers attached to the record in IMEx central and see if the publication identifier is also attached to the IMEx record
void	synchronizePublicationIdentifier(Publication publication, Publication imexPublication)	Update the IMEx record in case intact publication has a valid pubmed, unassigned or doi identifier that is not in IMEx central.

Field Detail

INTERNAL

static final String INTERNAL

Constant INTERNAL="jint"

See Also:

Constant Field Values

Method Detail

isPublicationIdentifierInSyncWithImexCentral

boolean isPublicationIdentifierInSyncWithImexCentral(String pubId,
                                                     String source,
                                                     ImexPublication imexPublication)
                                              throws BridgeFailedException

It will look at all identifiers attached to the record in IMEx central and see if the publication identifier is also attached to the IMEx record

Parameters:

pubId - a String object.

imexPublication - a ImexPublication object.

source - a String object.

Returns:

true if the publication identifier is in IMEx central, false otherwise

Throws:

BridgeFailedException - if any.

synchronizePublicationIdentifier

void synchronizePublicationIdentifier(Publication publication,
                                      Publication imexPublication)
                               throws EnricherException,
                                      BridgeFailedException

Update the IMEx record in case intact publication has a valid pubmed, unassigned or doi identifier that is not in IMEx central. It will not update the publication and it is possible that it will not update the IMEx record if the pubmed or doi identifier is different in IMEx central. The publication record in IMEx central should have a valid IMEx id.

Parameters:

publication - a Publication object.

imexPublication - a Publication object.

Throws:

EnricherException - : if the pubmed/doi identifier is different from the one in IMEx central

BridgeFailedException - : if record not found, idnetifier s not recognized or IMEx central is not responding

getImexCentralClient

ImexCentralClient getImexCentralClient()

getImexCentralClient.

Returns:

a ImexCentralClient object.