Package psidev.psi.mi.jami.json

Class InteractionViewerJson

java.lang.Object

psidev.psi.mi.jami.json.InteractionViewerJson

public class InteractionViewerJson
extends Object

This class is a central access to basic methods to register json writer. Existing writers : - psidev.psi.mi.jami.json.nary.MIJsonEvidenceWriter : writer that can write interaction evidences. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY does not make sense in this case as it can write both n-ary and binary interactions the same way. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY will be ignored. - psidev.psi.mi.jami.json.nary.MIJsonModelledWriter : writer that can write modelled interactions. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY does not make sense in this case as it can write both n-ary and binary interactions the same way. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY will be ignored. As there are not Complex writers, the MIJsonModelledWriter can be used to write complexes as well but the option MIJsonWriterOptions.INTERACTION_CATEGORY_OPTION_KEY should always be InteractionCategory.modelled - psidev.psi.mi.jami.json.nary.LightMIJsonWriter : writer that can write basic interactions. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY does not make sense in this case as it can write both n-ary and binary interactions the same way. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY will be ignored. - psidev.psi.mi.jami.json.nary.MIJsonWriter : writer that can write a mix of modelled, evidence and basic interactions. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY does not make sense in this case as it can write both n-ary and binary interactions the same way. The option MIJsonWriterOptions.COMPLEX_TYPE_OPTION_KEY will be ignored. - psidev.psi.mi.jami.json.binary.MIJsonEvidenceWriter : writer that can write interaction evidences as binary pairs. It will always break n-ary interactions in binary interactions. - psidev.psi.mi.jami.json.binary.MIJsonModelledWriter : writer that can write modelled interactions as binary pairs. It will always break n-ary interactions in binary interactions. As there are not Complex writers, the MIJsonModelledWriter can be used to write complexes as well but the option MIJsonWriterOptions.INTERACTION_CATEGORY_OPTION_KEY should always be InteractionCategory.modelled - psidev.psi.mi.jami.json.binary.LightMIJsonWriter : writer that can write basic interactions as binary pairs. It will always break n-ary interactions in binary interactions. - psidev.psi.mi.jami.json.binary.MIJsonWriter : writer that can write a mix of modelled, evidence and basic interactions as binary pairs. It will always break n-ary interactions in binary interactions. - psidev.psi.mi.jami.json.binary.MIJsonBinaryEvidenceWriter : writer that can write binary interaction evidences. - psidev.psi.mi.jami.json.binary.MIJsonModelledBinaryWriter : writer that can write modelled binary interactions as binary pairs. - psidev.psi.mi.jami.json.binary.LightMIJsonBinaryWriter : writer that can write basic binary interactions. . - psidev.psi.mi.jami.json.binary.MIJsonBinaryWriter : writer that can write a mix of modelled, evidence and basic binary interactions.

Since:

19/11/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
InteractionViewerJson()

Method Summary

Modifier and Type	Method	Description
static void	initialiseAllMIJsonWriters()	Register all existing MI JSON writers in the MI interaction writer factory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InteractionViewerJson

public InteractionViewerJson()

Method Detail

initialiseAllMIJsonWriters

public static void initialiseAllMIJsonWriters()

Register all existing MI JSON writers in the MI interaction writer factory