Package psidev.psi.mi.jami.json.binary

Class LightMIJsonBinaryWriter

java.lang.Object

psidev.psi.mi.jami.json.nary.AbstractMIJsonWriter<I>

psidev.psi.mi.jami.json.binary.AbstractMIJsonBinaryWriter<BinaryInteraction>

psidev.psi.mi.jami.json.binary.LightMIJsonBinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class LightMIJsonBinaryWriter
extends AbstractMIJsonBinaryWriter<BinaryInteraction>

JSON writer for light interactions

Since:

03/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightMIJsonBinaryWriter()	Constructor for LightMIJsonBinaryWriter.
LightMIJsonBinaryWriter(File file, OntologyTermFetcher fetcher)	Constructor for LightMIJsonBinaryWriter.
LightMIJsonBinaryWriter(OutputStream output, OntologyTermFetcher fetcher)	Constructor for LightMIJsonBinaryWriter.
LightMIJsonBinaryWriter(Writer writer, OntologyTermFetcher fetcher)	Constructor for LightMIJsonBinaryWriter.
LightMIJsonBinaryWriter(Writer writer, OntologyTermFetcher fetcher, Map<String,String> processedInteractors, Map<Feature,Integer> processedFeatures, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for LightMIJsonBinaryWriter.
LightMIJsonBinaryWriter(Map<String,String> processedInteractors, Map<Feature,Integer> processedFeatures, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for LightMIJsonBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initExpansionMethodInteractionWriter(Integer expansionId)	initExpansionMethodInteractionWriter.
protected void	initialiseInteractionWriter()	initialiseInteractionWriter.

Methods inherited from class psidev.psi.mi.jami.json.binary.AbstractMIJsonBinaryWriter

close, flush, getExpansionId, initialiseContext, reset, setExpansionId, writeComplex

Methods inherited from class psidev.psi.mi.jami.json.nary.AbstractMIJsonWriter

clear, end, getFetcher, getIdGenerator, getInteractionWriter, getInteractorWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, registerAndWriteInteractor, setFetcher, setInteractionWriter, start, write, write, write, writeEnd, writeStart

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightMIJsonBinaryWriter

public LightMIJsonBinaryWriter()

Constructor for LightMIJsonBinaryWriter.

LightMIJsonBinaryWriter

public LightMIJsonBinaryWriter(File file,
                               OntologyTermFetcher fetcher)
                        throws IOException

Constructor for LightMIJsonBinaryWriter.

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

Throws:

IOException - if any.

LightMIJsonBinaryWriter

public LightMIJsonBinaryWriter(OutputStream output,
                               OntologyTermFetcher fetcher)

Constructor for LightMIJsonBinaryWriter.

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

LightMIJsonBinaryWriter

public LightMIJsonBinaryWriter(Writer writer,
                               OntologyTermFetcher fetcher)

Constructor for LightMIJsonBinaryWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

LightMIJsonBinaryWriter

public LightMIJsonBinaryWriter(Writer writer,
                               OntologyTermFetcher fetcher,
                               Map<String,String> processedInteractors,
                               Map<Feature,Integer> processedFeatures,
                               Map<Entity,Integer> processedParticipants,
                               IncrementalIdGenerator idGenerator)

Constructor for LightMIJsonBinaryWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

processedInteractors - a Map object.

processedFeatures - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

LightMIJsonBinaryWriter

public LightMIJsonBinaryWriter(Map<String,String> processedInteractors,
                               Map<Feature,Integer> processedFeatures,
                               Map<Entity,Integer> processedParticipants,
                               IncrementalIdGenerator idGenerator)

Constructor for LightMIJsonBinaryWriter.

Parameters:

processedInteractors - a Map object.

processedFeatures - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

Method Detail

initialiseInteractionWriter

protected void initialiseInteractionWriter()

initialiseInteractionWriter.

Specified by:

initialiseInteractionWriter in class AbstractMIJsonWriter<BinaryInteraction>

initExpansionMethodInteractionWriter

protected void initExpansionMethodInteractionWriter(Integer expansionId)

initExpansionMethodInteractionWriter.

Specified by:

initExpansionMethodInteractionWriter in class AbstractMIJsonBinaryWriter<BinaryInteraction>

Parameters:

expansionId - a Integer object.