Package psidev.psi.mi.jami.json.binary

Class LightMIJsonWriter

java.lang.Object

psidev.psi.mi.jami.json.binary.AbstractMIJsonWriter<Interaction,BinaryInteraction>

psidev.psi.mi.jami.json.binary.LightMIJsonWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class LightMIJsonWriter
extends AbstractMIJsonWriter<Interaction,BinaryInteraction>

The jsonWriter which writes the light interactions

Since:

05/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightMIJsonWriter()	Constructor for LightMIJsonWriter.
LightMIJsonWriter(File file, OntologyTermFetcher fetcher)	Constructor for LightMIJsonWriter.
LightMIJsonWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMIJsonWriter.
LightMIJsonWriter(OutputStream output, OntologyTermFetcher fetcher)	Constructor for LightMIJsonWriter.
LightMIJsonWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMIJsonWriter.
LightMIJsonWriter(Writer writer, OntologyTermFetcher fetcher)	Constructor for LightMIJsonWriter.
LightMIJsonWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMIJsonWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseBinaryWriter(File file, OntologyTermFetcher fetcher)	initialiseBinaryWriter.
protected void	initialiseBinaryWriter(OutputStream output, OntologyTermFetcher fetcher)	initialiseBinaryWriter.
protected void	initialiseBinaryWriter(Writer writer, OntologyTermFetcher fetcher)	initialiseBinaryWriter.
protected void	initialiseDefaultBinaryWriter()	initialiseDefaultBinaryWriter.
protected void	initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.

Methods inherited from class psidev.psi.mi.jami.json.binary.AbstractMIJsonWriter

close, end, flush, getBinaryWriter, initialiseContext, reset, setBinaryWriter, setExpansionMethod, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightMIJsonWriter

public LightMIJsonWriter()

Constructor for LightMIJsonWriter.

LightMIJsonWriter

public LightMIJsonWriter(File file,
                         OntologyTermFetcher fetcher)
                  throws IOException

Constructor for LightMIJsonWriter.

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

Throws:

IOException - if any.

LightMIJsonWriter

public LightMIJsonWriter(OutputStream output,
                         OntologyTermFetcher fetcher)

Constructor for LightMIJsonWriter.

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

LightMIJsonWriter

public LightMIJsonWriter(Writer writer,
                         OntologyTermFetcher fetcher)

Constructor for LightMIJsonWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

LightMIJsonWriter

public LightMIJsonWriter(File file,
                         OntologyTermFetcher fetcher,
                         ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
                  throws IOException

Constructor for LightMIJsonWriter.

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

LightMIJsonWriter

public LightMIJsonWriter(OutputStream output,
                         OntologyTermFetcher fetcher,
                         ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)

Constructor for LightMIJsonWriter.

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

expansionMethod - a ComplexExpansionMethod object.

LightMIJsonWriter

public LightMIJsonWriter(Writer writer,
                         OntologyTermFetcher fetcher,
                         ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)

Constructor for LightMIJsonWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

initialiseDefaultExpansionMethod

protected void initialiseDefaultExpansionMethod()

initialiseDefaultExpansionMethod.

Specified by:

initialiseDefaultExpansionMethod in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

initialiseBinaryWriter

protected void initialiseBinaryWriter(File file,
                                      OntologyTermFetcher fetcher)
                               throws IOException

initialiseBinaryWriter.

Specified by:

initialiseBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

Throws:

IOException - if any.

initialiseBinaryWriter

protected void initialiseBinaryWriter(OutputStream output,
                                      OntologyTermFetcher fetcher)

initialiseBinaryWriter.

Specified by:

initialiseBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

initialiseBinaryWriter

protected void initialiseBinaryWriter(Writer writer,
                                      OntologyTermFetcher fetcher)

initialiseBinaryWriter.

Specified by:

initialiseBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

initialiseDefaultBinaryWriter

protected void initialiseDefaultBinaryWriter()

initialiseDefaultBinaryWriter.

Specified by:

initialiseDefaultBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>