Package psidev.psi.mi.jami.json.binary

Class MIJsonModelledBinaryWriter

java.lang.Object

psidev.psi.mi.jami.json.nary.AbstractMIJsonWriter<I>

psidev.psi.mi.jami.json.binary.AbstractMIJsonBinaryWriter<ModelledBinaryInteraction>

psidev.psi.mi.jami.json.binary.MIJsonModelledBinaryWriter

All Implemented Interfaces:

InteractionWriter<ModelledBinaryInteraction>

public class MIJsonModelledBinaryWriter
extends AbstractMIJsonBinaryWriter<ModelledBinaryInteraction>

JSON writer for ModelledInteractions

Since:

03/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MIJsonModelledBinaryWriter()	Constructor for MIJsonModelledBinaryWriter.
MIJsonModelledBinaryWriter(File file, OntologyTermFetcher fetcher)	Constructor for MIJsonModelledBinaryWriter.
MIJsonModelledBinaryWriter(OutputStream output, OntologyTermFetcher fetcher)	Constructor for MIJsonModelledBinaryWriter.
MIJsonModelledBinaryWriter(Writer writer, OntologyTermFetcher fetcher)	Constructor for MIJsonModelledBinaryWriter.
MIJsonModelledBinaryWriter(Writer writer, OntologyTermFetcher fetcher, Map<String,String> processedInteractors, Map<Feature,Integer> processedFeatures, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for MIJsonModelledBinaryWriter.
MIJsonModelledBinaryWriter(Map<String,String> processedInteractors, Map<Feature,Integer> processedFeatures, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator)	Constructor for MIJsonModelledBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initExpansionMethodInteractionWriter(Integer expansionId)	initExpansionMethodInteractionWriter.
protected void	initialiseInteractionWriter()	initialiseInteractionWriter.

Methods inherited from class psidev.psi.mi.jami.json.binary.AbstractMIJsonBinaryWriter

close, flush, getExpansionId, initialiseContext, reset, setExpansionId, writeComplex

Methods inherited from class psidev.psi.mi.jami.json.nary.AbstractMIJsonWriter

clear, end, getFetcher, getIdGenerator, getInteractionWriter, getInteractorWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, registerAndWriteInteractor, setFetcher, setInteractionWriter, start, write, write, write, writeEnd, writeStart

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MIJsonModelledBinaryWriter

public MIJsonModelledBinaryWriter()

Constructor for MIJsonModelledBinaryWriter.

MIJsonModelledBinaryWriter

public MIJsonModelledBinaryWriter(File file,
                                  OntologyTermFetcher fetcher)
                           throws IOException

Constructor for MIJsonModelledBinaryWriter.

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

Throws:

IOException - if any.

MIJsonModelledBinaryWriter

public MIJsonModelledBinaryWriter(OutputStream output,
                                  OntologyTermFetcher fetcher)

Constructor for MIJsonModelledBinaryWriter.

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

MIJsonModelledBinaryWriter

public MIJsonModelledBinaryWriter(Writer writer,
                                  OntologyTermFetcher fetcher)

Constructor for MIJsonModelledBinaryWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

MIJsonModelledBinaryWriter

public MIJsonModelledBinaryWriter(Writer writer,
                                  OntologyTermFetcher fetcher,
                                  Map<String,String> processedInteractors,
                                  Map<Feature,Integer> processedFeatures,
                                  Map<Entity,Integer> processedParticipants,
                                  IncrementalIdGenerator idGenerator)

Constructor for MIJsonModelledBinaryWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

processedInteractors - a Map object.

processedFeatures - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

MIJsonModelledBinaryWriter

public MIJsonModelledBinaryWriter(Map<String,String> processedInteractors,
                                  Map<Feature,Integer> processedFeatures,
                                  Map<Entity,Integer> processedParticipants,
                                  IncrementalIdGenerator idGenerator)

Constructor for MIJsonModelledBinaryWriter.

Parameters:

processedInteractors - a Map object.

processedFeatures - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

Method Detail

initExpansionMethodInteractionWriter

protected void initExpansionMethodInteractionWriter(Integer expansionId)

initExpansionMethodInteractionWriter.

Specified by:

initExpansionMethodInteractionWriter in class AbstractMIJsonBinaryWriter<ModelledBinaryInteraction>

Parameters:

expansionId - a Integer object.

initialiseInteractionWriter

protected void initialiseInteractionWriter()

initialiseInteractionWriter.

Specified by:

initialiseInteractionWriter in class AbstractMIJsonWriter<ModelledBinaryInteraction>