Package psidev.psi.mi.jami.json.binary

Class MIJsonWriter

java.lang.Object

psidev.psi.mi.jami.json.binary.AbstractMIJsonWriter<Interaction,BinaryInteraction>

psidev.psi.mi.jami.json.binary.MIJsonWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class MIJsonWriter
extends AbstractMIJsonWriter<Interaction,BinaryInteraction>

The jsonWriter which writes all interactions

Since:

05/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MIJsonWriter()	Constructor for MIJsonWriter.
MIJsonWriter(File file, OntologyTermFetcher fetcher)	Constructor for MIJsonWriter.
MIJsonWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for MIJsonWriter.
MIJsonWriter(OutputStream output, OntologyTermFetcher fetcher)	Constructor for MIJsonWriter.
MIJsonWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for MIJsonWriter.
MIJsonWriter(Writer writer, OntologyTermFetcher fetcher)	Constructor for MIJsonWriter.
MIJsonWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for MIJsonWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseBinaryWriter(File file, OntologyTermFetcher fetcher)	initialiseBinaryWriter.
protected void	initialiseBinaryWriter(OutputStream output, OntologyTermFetcher fetcher)	initialiseBinaryWriter.
protected void	initialiseBinaryWriter(Writer writer, OntologyTermFetcher fetcher)	initialiseBinaryWriter.
protected void	initialiseDefaultBinaryWriter()	initialiseDefaultBinaryWriter.
protected void	initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.

Methods inherited from class psidev.psi.mi.jami.json.binary.AbstractMIJsonWriter

close, end, flush, getBinaryWriter, initialiseContext, reset, setBinaryWriter, setExpansionMethod, start, write, write, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MIJsonWriter

public MIJsonWriter()

Constructor for MIJsonWriter.

MIJsonWriter

public MIJsonWriter(File file,
                    OntologyTermFetcher fetcher)
             throws IOException

Constructor for MIJsonWriter.

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

Throws:

IOException - if any.

MIJsonWriter

public MIJsonWriter(OutputStream output,
                    OntologyTermFetcher fetcher)

Constructor for MIJsonWriter.

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

MIJsonWriter

public MIJsonWriter(Writer writer,
                    OntologyTermFetcher fetcher)

Constructor for MIJsonWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

MIJsonWriter

public MIJsonWriter(File file,
                    OntologyTermFetcher fetcher,
                    ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)
             throws IOException

Constructor for MIJsonWriter.

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

expansionMethod - a ComplexExpansionMethod object.

Throws:

IOException - if any.

MIJsonWriter

public MIJsonWriter(OutputStream output,
                    OntologyTermFetcher fetcher,
                    ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)

Constructor for MIJsonWriter.

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

expansionMethod - a ComplexExpansionMethod object.

MIJsonWriter

public MIJsonWriter(Writer writer,
                    OntologyTermFetcher fetcher,
                    ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)

Constructor for MIJsonWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

expansionMethod - a ComplexExpansionMethod object.

Method Detail

initialiseDefaultExpansionMethod

protected void initialiseDefaultExpansionMethod()

initialiseDefaultExpansionMethod.

Specified by:

initialiseDefaultExpansionMethod in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

initialiseBinaryWriter

protected void initialiseBinaryWriter(File file,
                                      OntologyTermFetcher fetcher)
                               throws IOException

initialiseBinaryWriter.

Specified by:

initialiseBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

Throws:

IOException - if any.

initialiseBinaryWriter

protected void initialiseBinaryWriter(OutputStream output,
                                      OntologyTermFetcher fetcher)

initialiseBinaryWriter.

Specified by:

initialiseBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

initialiseBinaryWriter

protected void initialiseBinaryWriter(Writer writer,
                                      OntologyTermFetcher fetcher)

initialiseBinaryWriter.

Specified by:

initialiseBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

initialiseDefaultBinaryWriter

protected void initialiseDefaultBinaryWriter()

initialiseDefaultBinaryWriter.

Specified by:

initialiseDefaultBinaryWriter in class AbstractMIJsonWriter<Interaction,BinaryInteraction>