Package psidev.psi.mi.jami.json.nary

Class MIJsonWriter

java.lang.Object

psidev.psi.mi.jami.json.nary.AbstractMIJsonWriter<Interaction>

psidev.psi.mi.jami.json.nary.MIJsonWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class MIJsonWriter
extends AbstractMIJsonWriter<Interaction>

The jsonWriter which writes the all interactions

Since:

05/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MIJsonWriter()	Constructor for MIJsonWriter.
MIJsonWriter(File file, OntologyTermFetcher fetcher)	Constructor for MIJsonWriter.
MIJsonWriter(OutputStream output, OntologyTermFetcher fetcher)	Constructor for MIJsonWriter.
MIJsonWriter(Writer writer, OntologyTermFetcher fetcher)	Constructor for MIJsonWriter.

Method Summary

Modifier and Type	Method	Description
void	close()	close.
void	flush()	flush.
void	initialiseContext(Map<String,Object> options)	Initialise the context of the InteractionWriter given a map of options
protected void	initialiseInteractionWriter()	initialiseInteractionWriter.
protected void	initialiseSubWritersWith(Writer writer)	initialiseSubWritersWith.
void	reset()	reset.
void	write(Interaction interaction)	write.
protected void	writeComplex(Complex complex)	writeComplex.

Methods inherited from class psidev.psi.mi.jami.json.nary.AbstractMIJsonWriter

clear, end, getFetcher, getIdGenerator, getInteractionWriter, getInteractorWriter, getProcessedFeatures, getProcessedInteractors, getProcessedParticipants, getWriter, registerAndWriteInteractor, setFetcher, setInteractionWriter, start, write, write, writeEnd, writeStart

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MIJsonWriter

public MIJsonWriter()

Constructor for MIJsonWriter.

MIJsonWriter

public MIJsonWriter(File file,
                    OntologyTermFetcher fetcher)
             throws IOException

Constructor for MIJsonWriter.

Parameters:

file - a File object.

fetcher - a OntologyTermFetcher object.

Throws:

IOException - if any.

MIJsonWriter

public MIJsonWriter(OutputStream output,
                    OntologyTermFetcher fetcher)

Constructor for MIJsonWriter.

Parameters:

output - a OutputStream object.

fetcher - a OntologyTermFetcher object.

MIJsonWriter

public MIJsonWriter(Writer writer,
                    OntologyTermFetcher fetcher)

Constructor for MIJsonWriter.

Parameters:

writer - a Writer object.

fetcher - a OntologyTermFetcher object.

Method Detail

initialiseSubWritersWith

protected void initialiseSubWritersWith(Writer writer)

initialiseSubWritersWith.

Parameters:

writer - a Writer object.

close

public void close()
           throws MIIOException

close.

Specified by:

close in interface InteractionWriter<Interaction>

Overrides:

close in class AbstractMIJsonWriter<Interaction>

Throws:

MIIOException - if any.

reset

public void reset()
           throws MIIOException

reset.

Specified by:

reset in interface InteractionWriter<Interaction>

Overrides:

reset in class AbstractMIJsonWriter<Interaction>

Throws:

MIIOException - if any.

flush

public void flush()
           throws MIIOException

flush.

Specified by:

flush in interface InteractionWriter<Interaction>

Overrides:

flush in class AbstractMIJsonWriter<Interaction>

Throws:

MIIOException - if any.

writeComplex

protected void writeComplex(Complex complex)

writeComplex.

Specified by:

writeComplex in class AbstractMIJsonWriter<Interaction>

Parameters:

complex - a Complex object.

initialiseInteractionWriter

protected void initialiseInteractionWriter()

initialiseInteractionWriter.

Specified by:

initialiseInteractionWriter in class AbstractMIJsonWriter<Interaction>

write

public void write(Interaction interaction)
           throws MIIOException

write.

Specified by:

write in interface InteractionWriter<Interaction>

Overrides:

write in class AbstractMIJsonWriter<Interaction>

Parameters:

interaction - a I object.

Throws:

MIIOException - if any.

initialiseContext

public void initialiseContext(Map<String,Object> options)

Initialise the context of the InteractionWriter given a map of options

Specified by:

initialiseContext in interface InteractionWriter<Interaction>

Overrides:

initialiseContext in class AbstractMIJsonWriter<Interaction>

Parameters:

options - : the options given by the user