Package psidev.psi.mi.jami.tab.extension

Class MitabAlias

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultAlias

psidev.psi.mi.jami.tab.extension.MitabAlias

All Implemented Interfaces:

FileSourceContext, Alias

public class MitabAlias
extends DefaultAlias
implements FileSourceContext

Extended alias in MITAB

Since:

07/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Alias

AUTHOR_ASSIGNED_NAME, AUTHOR_ASSIGNED_NAME_MI, COMPLEX_RECOMMENDED_NAME, COMPLEX_RECOMMENDED_NAME_MI, COMPLEX_SYNONYM, COMPLEX_SYNONYM_MI, COMPLEX_SYSTEMATIC_NAME, COMPLEX_SYSTEMATIC_NAME_MI, GENE_NAME, GENE_NAME_MI, GENE_NAME_SYNONYM, GENE_NAME_SYNONYM_MI, ISOFORM_SYNONYM, ISOFORM_SYNONYM_MI, IUPAC, IUPAC_MI, LOCUS_NAME, LOCUS_NAME_MI, ORF_NAME, ORF_NAME_MI, SYNONYM, SYNONYM_MI

Constructor Summary

Constructors

Constructor	Description
MitabAlias(String dbSource, String name)	Constructor for MitabAlias.
MitabAlias(String dbSource, String name, String type)	Constructor for MitabAlias.
MitabAlias(String dbSource, String name, FileSourceLocator locator)	Constructor for MitabAlias.
MitabAlias(String dbSource, CvTerm type, String name)	Constructor for MitabAlias.
MitabAlias(String dbSource, CvTerm type, String name, FileSourceLocator locator)	Constructor for MitabAlias.

Method Summary

Modifier and Type	Method	Description
String	getDbSource()	Getter for the field dbSource.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultAlias

equals, getName, getType, hashCode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

MitabAlias

public MitabAlias(String dbSource,
                  CvTerm type,
                  String name)

Constructor for MitabAlias.

Parameters:

dbSource - a String object.

type - a CvTerm object.

name - a String object.

MitabAlias

public MitabAlias(String dbSource,
                  String name)

Constructor for MitabAlias.

Parameters:

dbSource - a String object.

name - a String object.

MitabAlias

public MitabAlias(String dbSource,
                  String name,
                  String type)

Constructor for MitabAlias.

Parameters:

dbSource - a String object.

name - a String object.

type - a String object.

MitabAlias

public MitabAlias(String dbSource,
                  CvTerm type,
                  String name,
                  FileSourceLocator locator)

Constructor for MitabAlias.

Parameters:

dbSource - a String object.

type - a CvTerm object.

name - a String object.

locator - a FileSourceLocator object.

MitabAlias

public MitabAlias(String dbSource,
                  String name,
                  FileSourceLocator locator)

Constructor for MitabAlias.

Parameters:

dbSource - a String object.

name - a String object.

locator - a FileSourceLocator object.

Method Detail

getDbSource

public String getDbSource()

Getter for the field dbSource.

Returns:

a String object.

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultAlias

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties