Package psidev.psi.mi.jami.tab.extension

Class MitabAnnotation

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultAnnotation

psidev.psi.mi.jami.tab.extension.MitabAnnotation

All Implemented Interfaces:

FileSourceContext, Annotation

public class MitabAnnotation
extends DefaultAnnotation
implements FileSourceContext

Extension of Annotation for Mitab with a sourceLocator

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Annotation

AUTHOR, AUTHOR_MI, BIPARTITE_EXPANSION, BIPARTITE_EXPANSION_MI, CAUTION, CAUTION_MI, CLUSTERED, CLUSTERED_MI, COMMENT, COMMENT_MI, COMPLEX_EXPANSION, COMPLEX_EXPANSION_MI, COMPLEX_PROPERTIES, COMPLEX_PROPERTIES_MI, CONTACT_EMAIL, CONTACT_EMAIL_MI, CURATION_DEPTH, CURATION_DEPTH_MI, EVIDENCE, EVIDENCE_MI, EXP_MODIFICATION, EXP_MODIFICATION_MI, EXPERIMENTALLY_OBSERVED, EXPERIMENTALLY_OBSERVED_MI, FIGURE_LEGEND, FIGURE_LEGEND_MI, FULL_COVERAGE, FULL_COVERAGE_MI, IMEX_CURATION, IMEX_CURATION_MI, IMPORTED, IMPORTED_MI, INTERNALLY_CURATED, INTERNALLY_CURATED_MI, MATRIX_EXPANSION, MATRIX_EXPANSION_MI, MIMIX_CURATION, MIMIX_CURATION_MI, NUCLEIC_ACID_PROTEIN, NUCLEIC_ACID_PROTEIN_MI, PARTIAL_COVERAGE, PARTIAL_COVERAGE_MI, POSTAL_ADDRESS, PREDICTED, PREDICTED_MI, PROTEIN_PROTEIN, PROTEIN_PROTEIN_MI, PUBLICATION_JOURNAL, PUBLICATION_JOURNAL_MI, PUBLICATION_TITLE, PUBLICATION_TITLE_MI, PUBLICATION_YEAR, PUBLICATION_YEAR_MI, RAPID_CURATION, RAPID_CURATION_MI, SEARCH_URL, SEARCH_URL_MI, SMALL_MOLECULE_PROTEIN, SMALL_MOLECULE_PROTEIN_MI, SPOKE_EXPANSION, SPOKE_EXPANSION_MI, TEXT_MINING, TEXT_MINING_MI, URL, URL_MI, VALIDATION_REGEXP, VALIDATION_REGEXP_MI

Constructor Summary

Constructors

Constructor	Description
MitabAnnotation(String topic, String value)	Constructor for MitabAnnotation.
MitabAnnotation(CvTerm topic)	Constructor for MitabAnnotation.
MitabAnnotation(CvTerm topic, String value)	Constructor for MitabAnnotation.
MitabAnnotation(CvTerm topic, String value, FileSourceLocator sourceLocator)	Constructor for MitabAnnotation.
MitabAnnotation(CvTerm topic, FileSourceLocator sourceLocator)	Constructor for MitabAnnotation.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultAnnotation

equals, getTopic, getValue, hashCode, setValue

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

MitabAnnotation

public MitabAnnotation(CvTerm topic)

Constructor for MitabAnnotation.

Parameters:

topic - a CvTerm object.

MitabAnnotation

public MitabAnnotation(CvTerm topic,
                       String value)

Constructor for MitabAnnotation.

Parameters:

topic - a CvTerm object.

value - a String object.

MitabAnnotation

public MitabAnnotation(String topic,
                       String value)

Constructor for MitabAnnotation.

Parameters:

topic - a String object.

value - a String object.

MitabAnnotation

public MitabAnnotation(CvTerm topic,
                       FileSourceLocator sourceLocator)

Constructor for MitabAnnotation.

Parameters:

topic - a CvTerm object.

sourceLocator - a FileSourceLocator object.

MitabAnnotation

public MitabAnnotation(CvTerm topic,
                       String value,
                       FileSourceLocator sourceLocator)

Constructor for MitabAnnotation.

Parameters:

topic - a CvTerm object.

value - a String object.

sourceLocator - a FileSourceLocator object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultAnnotation

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties