Package psidev.psi.mi.jami.tab.extension

Class MitabExperiment

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultExperiment

psidev.psi.mi.jami.tab.extension.MitabExperiment

All Implemented Interfaces:

FileSourceContext, Experiment

public class MitabExperiment
extends DefaultExperiment
implements FileSourceContext

Mitab extension for Experiment. It contains a SourceLocator

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Experiment

INFERRED_BY_CURATOR, INFERRED_BY_CURATOR_MI, UNSPECIFIED_METHOD, UNSPECIFIED_METHOD_MI

Constructor Summary

Constructors

Constructor	Description
MitabExperiment(Publication publication)	Constructor for MitabExperiment.
MitabExperiment(Publication publication, CvTerm interactionDetectionMethod)	Constructor for MitabExperiment.
MitabExperiment(Publication publication, CvTerm interactionDetectionMethod, Organism organism)	Constructor for MitabExperiment.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultExperiment

addAllInteractionEvidences, addAllVariableParameters, addInteractionEvidence, addVariableParameter, getAnnotations, getConfidences, getHostOrganism, getInteractionDetectionMethod, getInteractionEvidences, getPublication, getVariableParameters, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseConfidences, initialiseConfidencesWith, initialiseInteractions, initialiseInteractionsWith, initialiseVariableParameters, initialiseVariableParametersWith, initialiseXrefs, initialiseXrefsWith, removeAllInteractionEvidences, removeAllVariableParameters, removeInteractionEvidence, removeVariableParameter, setHostOrganism, setInteractionDetectionMethod, setPublication, setPublicationAndAddExperiment

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MitabExperiment

public MitabExperiment(Publication publication)

Constructor for MitabExperiment.

Parameters:

publication - a Publication object.

MitabExperiment

public MitabExperiment(Publication publication,
                       CvTerm interactionDetectionMethod)

Constructor for MitabExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

MitabExperiment

public MitabExperiment(Publication publication,
                       CvTerm interactionDetectionMethod,
                       Organism organism)

Constructor for MitabExperiment.

Parameters:

publication - a Publication object.

interactionDetectionMethod - a CvTerm object.

organism - a Organism object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultExperiment

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties