Package psidev.psi.mi.jami.tab.extension

Class MitabPublication

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultPublication

psidev.psi.mi.jami.tab.extension.MitabPublication

All Implemented Interfaces:

FileSourceContext, Publication

public class MitabPublication
extends DefaultPublication
implements FileSourceContext

Mitab extension of Publication. It contains a FileSourceLocator

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MitabPublication()	Constructor for MitabPublication.
MitabPublication(String pubmed)	Constructor for MitabPublication.
MitabPublication(String title, String journal, Date publicationDate)	Constructor for MitabPublication.
MitabPublication(String title, String journal, Date publicationDate, String imexId, Source source)	Constructor for MitabPublication.
MitabPublication(String title, String journal, Date publicationDate, CurationDepth curationDepth, Source source)	Constructor for MitabPublication.
MitabPublication(String pubmed, String imexId, Source source)	Constructor for MitabPublication.
MitabPublication(String pubmed, CurationDepth curationDepth, Source source)	Constructor for MitabPublication.
MitabPublication(Xref identifier)	Constructor for MitabPublication.
MitabPublication(Xref identifier, String imexId, Source source)	Constructor for MitabPublication.
MitabPublication(Xref identifier, CurationDepth curationDepth, Source source)	Constructor for MitabPublication.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultPublication

addAllExperiments, addExperiment, assignImexId, clearPropertiesLinkedToIdentifiers, clearPropertiesLinkedToXrefs, getAnnotations, getAuthors, getCurationDepth, getDoi, getExperiments, getIdentifiers, getImexId, getJournal, getPublicationDate, getPubmedId, getReleasedDate, getSource, getTitle, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseAuthors, initialiseAuthorsWith, initialiseExperiments, initialiseExperimentsWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseXrefs, initialiseXrefsWith, processAddedIdentifierEvent, processAddedXrefEvent, processRemovedIdentifierEvent, processRemovedXrefEvent, removeAllExperiments, removeExperiment, setCurationDepth, setDoi, setJournal, setPublicationDate, setPubmedId, setReleasedDate, setSource, setTitle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MitabPublication

public MitabPublication()

Constructor for MitabPublication.

MitabPublication

public MitabPublication(Xref identifier)

Constructor for MitabPublication.

Parameters:

identifier - a Xref object.

MitabPublication

public MitabPublication(Xref identifier,
                        CurationDepth curationDepth,
                        Source source)

Constructor for MitabPublication.

Parameters:

identifier - a Xref object.

curationDepth - a CurationDepth object.

source - a Source object.

MitabPublication

public MitabPublication(Xref identifier,
                        String imexId,
                        Source source)

Constructor for MitabPublication.

Parameters:

identifier - a Xref object.

imexId - a String object.

source - a Source object.

MitabPublication

public MitabPublication(String pubmed)

Constructor for MitabPublication.

Parameters:

pubmed - a String object.

MitabPublication

public MitabPublication(String pubmed,
                        CurationDepth curationDepth,
                        Source source)

Constructor for MitabPublication.

Parameters:

pubmed - a String object.

curationDepth - a CurationDepth object.

source - a Source object.

MitabPublication

public MitabPublication(String pubmed,
                        String imexId,
                        Source source)

Constructor for MitabPublication.

Parameters:

pubmed - a String object.

imexId - a String object.

source - a Source object.

MitabPublication

public MitabPublication(String title,
                        String journal,
                        Date publicationDate)

Constructor for MitabPublication.

Parameters:

title - a String object.

journal - a String object.

publicationDate - a Date object.

MitabPublication

public MitabPublication(String title,
                        String journal,
                        Date publicationDate,
                        CurationDepth curationDepth,
                        Source source)

Constructor for MitabPublication.

Parameters:

title - a String object.

journal - a String object.

publicationDate - a Date object.

curationDepth - a CurationDepth object.

source - a Source object.

MitabPublication

public MitabPublication(String title,
                        String journal,
                        Date publicationDate,
                        String imexId,
                        Source source)

Constructor for MitabPublication.

Parameters:

title - a String object.

journal - a String object.

publicationDate - a Date object.

imexId - a String object.

source - a Source object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultPublication

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties