Package psidev.psi.mi.jami.tab.extension

Class MitabXref

java.lang.Object

psidev.psi.mi.jami.tab.extension.MitabXref

All Implemented Interfaces:

FileSourceContext, Xref

public class MitabXref
extends Object
implements Xref, FileSourceContext

Mitab extension for Xref. It contains a FileSourceLocator

Since:

14/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Xref

CHAIN_PARENT, CHAIN_PARENT_MI, CHEBI, CHEBI_MI, COMPLEX_PORTAL, COMPLEX_PORTAL_MI, COMPLEX_PRIMARY, COMPLEX_PRIMARY_MI, DDBJ_EMBL_GENBANK, DDBJ_EMBL_GENBANK_MI, DOI, DOI_MI, ENSEMBL, ENSEMBL_GENOMES, ENSEMBL_GENOMES_MI, ENSEMBL_MI, ENTREZ_GENE, ENTREZ_GENE_MI, GO, GO_MI, IDENTITY, IDENTITY_MI, IMEX, IMEX_MI, IMEX_PRIMARY, IMEX_PRIMARY_MI, INTACT_MI, INTERACTOR_SET_QUALIFIER, INTERACTOR_SET_QUALIFIER_MI, INTERPRO, INTERPRO_MI, ISOFORM_PARENT, ISOFORM_PARENT_MI, METHOD_REFERENCE, METHOD_REFERENCE_MI, PRIMARY, PRIMARY_MI, PUBMED, PUBMED_MI, REFSEQ, REFSEQ_MI, RESID, RESID_MI, SECONDARY, SECONDARY_MI, SEE_ALSO, SEE_ALSO_MI, SO, SO_MI, UNIPROTKB, UNIPROTKB_MI, UNIPROTKB_SWISSPROT, UNIPROTKB_SWISSPROT_MI, UNIPROTKB_TREMBL, UNIPROTKB_TREMBL_MI

Constructor Summary

Constructors

Constructor	Description
MitabXref(String database, String id)	Constructor for MitabXref.
MitabXref(String database, String id, String qualifier)	Constructor for MitabXref.
MitabXref(String database, String id, CvTerm qualifier)	Constructor for MitabXref.
MitabXref(CvTerm database, String id)	Constructor for MitabXref.
MitabXref(CvTerm database, String id, String version)	Constructor for MitabXref.
MitabXref(CvTerm database, String id, String version, CvTerm qualifier)	Constructor for MitabXref.
MitabXref(CvTerm database, String id, CvTerm qualifier)	Constructor for MitabXref.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
CvTerm	getDatabase()	Getter for the field database.
String	getId()	Getter for the field id.
CvTerm	getQualifier()	Getter for the field qualifier.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
String	getVersion()	Getter for the field version.
int	hashCode()
void	setQualifier(CvTerm qualifier)	Setter for the field qualifier.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()	toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

MitabXref

public MitabXref(CvTerm database,
                 String id,
                 CvTerm qualifier)

Constructor for MitabXref.

Parameters:

database - a CvTerm object.

id - a String object.

qualifier - a CvTerm object.

MitabXref

public MitabXref(CvTerm database,
                 String id,
                 String version,
                 CvTerm qualifier)

Constructor for MitabXref.

Parameters:

database - a CvTerm object.

id - a String object.

version - a String object.

qualifier - a CvTerm object.

MitabXref

public MitabXref(CvTerm database,
                 String id,
                 String version)

Constructor for MitabXref.

Parameters:

database - a CvTerm object.

id - a String object.

version - a String object.

MitabXref

public MitabXref(CvTerm database,
                 String id)

Constructor for MitabXref.

Parameters:

database - a CvTerm object.

id - a String object.

MitabXref

public MitabXref(String database,
                 String id,
                 String qualifier)

Constructor for MitabXref.

Parameters:

database - a String object.

id - a String object.

qualifier - a String object.

MitabXref

public MitabXref(String database,
                 String id,
                 CvTerm qualifier)

Constructor for MitabXref.

Parameters:

database - a String object.

id - a String object.

qualifier - a CvTerm object.

MitabXref

public MitabXref(String database,
                 String id)

Constructor for MitabXref.

Parameters:

database - a String object.

id - a String object.

Method Detail

getDatabase

public CvTerm getDatabase()

Getter for the field database.

Specified by:

getDatabase in interface Xref

Returns:

a CvTerm object.

getId

public String getId()

Getter for the field id.

Specified by:

getId in interface Xref

Returns:

a String object.

getVersion

public String getVersion()

Getter for the field version.

Specified by:

getVersion in interface Xref

Returns:

a String object.

getQualifier

public CvTerm getQualifier()

Getter for the field qualifier.

Specified by:

getQualifier in interface Xref

Returns:

a CvTerm object.

setQualifier

public void setQualifier(CvTerm qualifier)

Setter for the field qualifier.

Parameters:

qualifier - a CvTerm object.

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class Object

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties