Package psidev.psi.mi.jami.tab.io.writer

Class DefaultMitabWriter

java.lang.Object

psidev.psi.mi.jami.tab.io.writer.DefaultMitabWriter

All Implemented Interfaces:

InteractionWriter

public class DefaultMitabWriter
extends Object
implements InteractionWriter

Generic writer for MITAB

Since:

02/05/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
DefaultMitabWriter()

Method Summary

Modifier and Type	Method	Description
void	close()	close.
void	end()	end.
void	flush()	flush.
protected InteractionWriter	getDelegate()	Getter for the field delegate.
void	initialiseContext(Map options)	Initialise the context of the InteractionWriter given a map of options
void	reset()	reset.
protected void	setDelegate(InteractionWriter delegate)	Setter for the field delegate.
void	start()	start.
void	write(Collection interactions)	write.
void	write(Iterator interactions)	Writes Interaction objects using iterator
void	write(Interaction interaction)	write.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DefaultMitabWriter

public DefaultMitabWriter()

Method Detail

initialiseContext

public void initialiseContext(Map options)

Initialise the context of the InteractionWriter given a map of options

Specified by:

initialiseContext in interface InteractionWriter

Parameters:

options - : the options given by the user

start

public void start()
           throws MIIOException

start.

Specified by:

start in interface InteractionWriter

Throws:

MIIOException - if any.

end

public void end()
         throws MIIOException

end.

Specified by:

end in interface InteractionWriter

Throws:

MIIOException - if any.

write

public void write(Interaction interaction)
           throws MIIOException

write.

Specified by:

write in interface InteractionWriter

Parameters:

interaction - a Interaction object.

Throws:

MIIOException - if any.

write

public void write(Collection interactions)
           throws MIIOException

write.

Specified by:

write in interface InteractionWriter

Parameters:

interactions - a Collection object.

Throws:

MIIOException - if any.

write

public void write(Iterator interactions)
           throws MIIOException

Writes Interaction objects using iterator

Specified by:

write in interface InteractionWriter

Parameters:

interactions - : the iterator of interactions to write

Throws:

MIIOException - : if cannot write

flush

public void flush()
           throws MIIOException

flush.

Specified by:

flush in interface InteractionWriter

Throws:

MIIOException - if any.

close

public void close()
           throws MIIOException

close.

Specified by:

close in interface InteractionWriter

Throws:

MIIOException - if any.

reset

public void reset()
           throws MIIOException

reset.

Specified by:

reset in interface InteractionWriter

Throws:

MIIOException - if any.

getDelegate

protected InteractionWriter getDelegate()

Getter for the field delegate.

Returns:

a InteractionWriter object.

setDelegate

protected void setDelegate(InteractionWriter delegate)

Setter for the field delegate.

Parameters:

delegate - a InteractionWriter object.