OrganismUtils (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.utils.OrganismUtils

```
public class OrganismUtils
extends Object
```
Created with IntelliJ IDEA.

Since:

29/07/13

Version:

$Id: $

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors
Constructor Description

OrganismUtils()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static Organism`	`createChemicalSynthesisOrganism()`	createChemicalSynthesisOrganism
`static Organism`	`createInSilicoOrganism()`	createInSilicoOrganism
`static Organism`	`createInVitroOrganism()`	createInVitroOrganism
`static Organism`	`createInVivoOrganism()`	createInVivoOrganism
`static Organism`	`createSpecialistOrganism(int taxID)`	If the TaxId is one of the reserved numbers (-5 to -1), it denotes a non-real organism.
`static Organism`	`createUnknownOrganism()`	createUnknownOrganism

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - OrganismUtils
```
public OrganismUtils()
```
- Method Detail
  - createSpecialistOrganism
```
public static Organism createSpecialistOrganism(int taxID)
```
    If the TaxId is one of the reserved numbers (-5 to -1), it denotes a non-real organism. An organism with these names will be produced if there is match. Otherwise null is returned. -1 = In Vitro -2 = Chemical synthesis -3 = Unknown -4 = In vivo -5 = In Silico
    
    Parameters:
    
    taxID - A taxId which might match one of the reserved terms.
    
    Returns:
    
    A complete organism record if the taxID matches reserved term. Null if it could not be found.
  - createUnknownOrganism
```
public static Organism createUnknownOrganism()
```
    createUnknownOrganism
    
    Returns:
    
    a Organism object.
  - createInVitroOrganism
```
public static Organism createInVitroOrganism()
```
    createInVitroOrganism
    
    Returns:
    
    a Organism object.
  - createChemicalSynthesisOrganism
```
public static Organism createChemicalSynthesisOrganism()
```
    createChemicalSynthesisOrganism
    
    Returns:
    
    a Organism object.
  - createInVivoOrganism
```
public static Organism createInVivoOrganism()
```
    createInVivoOrganism
    
    Returns:
    
    a Organism object.
  - createInSilicoOrganism
```
public static Organism createInSilicoOrganism()
```
    createInSilicoOrganism
    
    Returns:
    
    a Organism object.