Package psidev.psi.mi.jami.utils.comparator.feature

Class UnambiguousFeatureBaseComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.feature.FeatureBaseComparator

psidev.psi.mi.jami.utils.comparator.feature.UnambiguousFeatureBaseComparator

All Implemented Interfaces:

Comparator<Feature>

public class UnambiguousFeatureBaseComparator
extends FeatureBaseComparator

Unambiguous feature comparator. It will look first at the feature shortnames (case insensitive). Then, it will compare the feature types using a UnambiguousCvTermComparator. If the feature types are the same, it will compare interactionEffect and then interactionDependency using UnambiguousCvTermComparator. Then it will compare interpro identifier and if the features do not have an interpro identifier, it will look for at the identifiers in the feature identifiers using UnambiguousIdentifierComparator. Finally, it will look at the ranges using UnambiguousRangeComparator.

Since:

16/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousFeatureBaseComparator()	Creates a new UnambiguousFeatureBaseComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Feature feature1, Feature feature2)	Use UnambiguousFeatureBaseComparator to know if two features are equals.
UnambiguousCvTermComparator	getCvTermComparator()	getCvTermComparator
UnambiguousExternalIdentifierComparator	getIdentifierComparator()	getIdentifierComparator
static int	hashCode(Feature feature)	hashCode

Methods inherited from class psidev.psi.mi.jami.utils.comparator.feature.FeatureBaseComparator

compare, getExternalIdentifierCollectionComparator, getRangeCollectionComparator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousFeatureBaseComparator

public UnambiguousFeatureBaseComparator()

Creates a new UnambiguousFeatureBaseComparator. It will use a UnambiguousCvTermComparator to compare feature types and range status, a UnambiguousExternalIdentifierComparator to compare identifiers and a UnambiguousRangeComparator to compare ranges

Method Detail

getCvTermComparator

public UnambiguousCvTermComparator getCvTermComparator()

getCvTermComparator

Overrides:

getCvTermComparator in class FeatureBaseComparator

Returns:

a UnambiguousCvTermComparator object.

getIdentifierComparator

public UnambiguousExternalIdentifierComparator getIdentifierComparator()

getIdentifierComparator

Overrides:

getIdentifierComparator in class FeatureBaseComparator

Returns:

a UnambiguousExternalIdentifierComparator object.

areEquals

public static boolean areEquals(Feature feature1,
                                Feature feature2)

Use UnambiguousFeatureBaseComparator to know if two features are equals.

Parameters:

feature1 - a Feature object.

feature2 - a Feature object.

Returns:

true if the two features are equal

hashCode

public static int hashCode(Feature feature)

hashCode

Parameters:

feature - a Feature object.

Returns:

the hashcode consistent with the equals method for this comparator