Package psidev.psi.mi.jami.utils.comparator.interactor

Class InteractorBaseComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.interactor.InteractorBaseComparator

All Implemented Interfaces:

Comparator<Interactor>

Direct Known Subclasses:

UnambiguousInteractorBaseComparator

public class InteractorBaseComparator
extends Object
implements Comparator<Interactor>

nteractor comparator It will only compare identifiers if one interactor does have identifiers using UnambiguousIdentifierComparator. Otherwise, it will first compare shortNames (case sensitive) fullnames(case sensitive) and if the shortNames and fullnames are the same, it will compare the aliases using UnambiguousAliasComparator. This comparator will ignore all the other properties of an interactor.

Since:

21/12/12

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
InteractorBaseComparator(Comparator<Xref> identifierComparator, AliasComparator aliasComparator)	Constructor for InteractorBaseComparator.
InteractorBaseComparator(CollectionComparator<Xref> identifierComparator, CollectionComparator<Alias> aliasComparator)	Constructor for InteractorBaseComparator.

Method Summary

Modifier and Type	Method	Description
int	compare(Interactor interactor1, Interactor interactor2)	It will only compare identifiers if one interactor does have identifiers using UnambiguousIdentifierComparator.
CollectionComparator<Alias>	getAliasCollectionComparator()	Getter for the field aliasCollectionComparator.
Comparator<Alias>	getAliasComparator()	Getter for the field aliasComparator.
CollectionComparator<Xref>	getIdentifierCollectionComparator()	Getter for the field identifierCollectionComparator.
Comparator<Xref>	getIdentifierComparator()	Getter for the field identifierComparator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

InteractorBaseComparator

public InteractorBaseComparator(Comparator<Xref> identifierComparator,
                                AliasComparator aliasComparator)

Constructor for InteractorBaseComparator.

Parameters:

identifierComparator - a Comparator object.

aliasComparator - a AliasComparator object.

InteractorBaseComparator

public InteractorBaseComparator(CollectionComparator<Xref> identifierComparator,
                                CollectionComparator<Alias> aliasComparator)

Constructor for InteractorBaseComparator.

Parameters:

identifierComparator - a CollectionComparator object.

aliasComparator - a CollectionComparator object.

Method Detail

getIdentifierComparator

public Comparator<Xref> getIdentifierComparator()

Getter for the field identifierComparator.

Returns:

a Comparator object.

getAliasComparator

public Comparator<Alias> getAliasComparator()

Getter for the field aliasComparator.

Returns:

a Comparator object.

getIdentifierCollectionComparator

public CollectionComparator<Xref> getIdentifierCollectionComparator()

Getter for the field identifierCollectionComparator.

Returns:

a CollectionComparator object.

getAliasCollectionComparator

public CollectionComparator<Alias> getAliasCollectionComparator()

Getter for the field aliasCollectionComparator.

Returns:

a CollectionComparator object.

compare

public int compare(Interactor interactor1,
                   Interactor interactor2)

It will only compare identifiers if one interactor does have identifiers using UnambiguousIdentifierComparator. Otherwise, it will first compare shortNames (case sensitive) fullnames(case sensitive) and if the shortNames and fullnames are the same, it will compare the aliases using UnambiguousAliasComparator. This comparator will ignore all the other properties of an interactor.

Specified by:

compare in interface Comparator<Interactor>

Parameters:

interactor1 - a Interactor object.

interactor2 - a Interactor object.

Returns:

a int.