UnambiguousGeneComparator (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.utils.comparator.interactor.GeneComparator
- - psidev.psi.mi.jami.utils.comparator.interactor.UnambiguousGeneComparator

All Implemented Interfaces:

Comparator<Gene>
```
public class UnambiguousGeneComparator
extends GeneComparator
```
Unambiguous gene comparator. It will first use UnambiguousInteractorBaseComparator to compare the basic interactor properties If the basic interactor properties are the same, It will look at ensembl identifier (the interactor with non null ensembl identifier will always come first). If the ensembl identifiers are not set, it will look at the ensemblGenome identifiers (the interactor with non null ensembl genome identifier will always come first). If the ensemblGemome identifiers are not set, it will look at the entrez/gene id (the interactor with non null entrez/gene id will always come first). If the entrez/gene ids are not set, it will look at the refseq identifiers (the interactor with non null refseq identifier will always come first).
Since:
```
15/01/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors
Constructor Description

UnambiguousGeneComparator()
Creates a new UnambiguousGeneComparator.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static boolean`	`areEquals(Gene gene1, Gene gene2)`	Use UnambiguousGeneComparator to know if two genes are equals.
`UnambiguousInteractorBaseComparator`	`getInteractorComparator()`	getInteractorComparator

Methods inherited from class psidev.psi.mi.jami.utils.comparator.interactor.GeneComparator
compare

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator
equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

- Constructor Detail
  - UnambiguousGeneComparator
```
public UnambiguousGeneComparator()
```
    Creates a new UnambiguousGeneComparator. It will uses a UnambiguousInteractorBaseComparator to compare interactor properties
- Method Detail
  - getInteractorComparator
```
public UnambiguousInteractorBaseComparator getInteractorComparator()
```
    getInteractorComparator
    
    Overrides:
    
    getInteractorComparator in class GeneComparator
    
    Returns:
    
    a UnambiguousInteractorBaseComparator object.
  - areEquals
```
public static boolean areEquals(Gene gene1,
                                Gene gene2)
```
    Use UnambiguousGeneComparator to know if two genes are equals.
    
    Parameters:
    
    gene1 - a Gene object.
    
    gene2 - a Gene object.
    
    Returns:
    
    true if the two genes are equal