Package psidev.psi.mi.jami.utils.comparator.organism

Class UnambiguousOrganismComparator

java.lang.Object

psidev.psi.mi.jami.utils.comparator.organism.OrganismTaxIdComparator

psidev.psi.mi.jami.utils.comparator.organism.OrganismComparator

psidev.psi.mi.jami.utils.comparator.organism.UnambiguousOrganismComparator

All Implemented Interfaces:

Comparator<Organism>

public class UnambiguousOrganismComparator
extends OrganismComparator

Unambiguous organism comparator. It will first look at the taxids. If taxIds are the same , it will look at the cell types using UnambiguousOrganismComparator. If the cell types are the same, it will look at the tissues using UnambiguousOrganismComparator. If the tissues are the same, it will look at the compartments using UnambiguousOrganismComparator. - Two organisms which are null are equals - The organism which is not null is before null.

Since:

15/01/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
UnambiguousOrganismComparator()	Creates a new UnambiguousOrganismComparator.

Method Summary

Modifier and Type	Method	Description
static boolean	areEquals(Organism organism1, Organism organism2)	Use UnambiguousOrganismComparator to know if two organism are equals.
int	compare(Organism organism1, Organism organism2)	It will first look at the taxids.
UnambiguousCvTermComparator	getCvTermComparator()
static int	hashCode(Organism organism)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Detail

UnambiguousOrganismComparator

public UnambiguousOrganismComparator()

Creates a new UnambiguousOrganismComparator. It will use a UnambiguousCvTermComparator to compare tissues, cell types and compartments.

Method Detail

getCvTermComparator

public UnambiguousCvTermComparator getCvTermComparator()

Overrides:

getCvTermComparator in class OrganismComparator

compare

public int compare(Organism organism1,
                   Organism organism2)

It will first look at the taxids. If taxIds are the same , it will look at the cell types. If the cell types are the same, it will look at the tissues. If the tissues are the same, it will look at the compartments. - Two organisms which are null are equals - The organism which is not null is before null. It will first look at the taxids. If taxIds are the same , it will look at the cell types using UnambiguousOrganismComparator. If the cell types are the same, it will look at the tissues using UnambiguousOrganismComparator. If the tissues are the same, it will look at the compartments using UnambiguousOrganismComparator. - Two organisms which are null are equals - The organism which is not null is before null.

Specified by:

compare in interface Comparator<Organism>

Overrides:

compare in class OrganismComparator

Parameters:

organism1 - a Organism object.

organism2 - a Organism object.

Returns:

a int.

areEquals

public static boolean areEquals(Organism organism1,
                                Organism organism2)

Use UnambiguousOrganismComparator to know if two organism are equals.

hashCode

public static int hashCode(Organism organism)