Package psidev.psi.mi.jami.xml.cache

Interface PsiXmlIdCache

  • All Known Implementing Classes:
    InMemoryPsiXmlCache, PsiXmlFileIndexCache
    public interface PsiXmlIdCache
    Index that can retrieve a MI object given its id
    Since:
    06/11/13
    Version:
    $Id$
    Author:
    Marine Dumousseau (marine@ebi.ac.uk)

    • Method Detail

      • getAvailability

        AbstractAvailability getAvailability​(int id)

        getAvailability.

        Parameters:
        id - a int.
        Returns:
        the availability registered with this id, null if it does not exist

      • registerExperiment

        void registerExperiment​(int id,
                        Experiment object)
        Register an experiment with an id
        Parameters:
        id - a int.
        object - a Experiment object.

      • getExperiment

        Experiment getExperiment​(int id)

        getExperiment.

        Parameters:
        id - a int.
        Returns:
        the experiment registered with this id, null if it does not exist

      • registerInteraction

        void registerInteraction​(int id,
                         Interaction object)
        Register an interaction with an id
        Parameters:
        id - a int.
        object - a Interaction object.

      • getInteraction

        Interaction getInteraction​(int id)

        getInteraction.

        Parameters:
        id - a int.
        Returns:
        the interaction registered with this id, null if it does not exist

      • registerInteractor

        void registerInteractor​(int id,
                        Interactor object)
        Register an interactor with an id
        Parameters:
        id - a int.
        object - a Interactor object.

      • getInteractor

        Interactor getInteractor​(int id)

        getInteractor.

        Parameters:
        id - a int.
        Returns:
        the interactor registered with this id, null if it does not exist

      • registerParticipant

        void registerParticipant​(int id,
                         Entity object)
        Register a participant with an id
        Parameters:
        id - a int.
        object - a Entity object.

      • getParticipant

        Entity getParticipant​(int id)

        getParticipant.

        Parameters:
        id - a int.
        Returns:
        the participant registered with this id, null if it does not exist

      • registerFeature

        void registerFeature​(int id,
                     Feature object)
        Register a feature with an id
        Parameters:
        id - a int.
        object - a Feature object.

      • getFeature

        Feature getFeature​(int id)

        getFeature.

        Parameters:
        id - a int.
        Returns:
        the feature registered with this id, null if it does not exist

      • registerComplexParticipant

        void registerComplexParticipant​(int id,
                                ModelledEntity object)
        Register a participant involved in a complex with an id
        Parameters:
        id - a int.
        object - a ModelledEntity object.

      • getComplexParticipant

        ModelledEntity getComplexParticipant​(int id)

        getComplexParticipant.

        Parameters:
        id - a int.
        Returns:
        the participant registered with this id, null if it does not exist

      • registerComplexFeature

        void registerComplexFeature​(int id,
                            ModelledFeature object)
        Register a complex feature with an id
        Parameters:
        id - a int.
        object - a ModelledFeature object.

      • getComplexFeature

        ModelledFeature getComplexFeature​(int id)

        getComplexFeature.

        Parameters:
        id - a int.
        Returns:
        the feature registered with this id, null if it does not exist

      • registerComplex

        void registerComplex​(int id,
                     Complex object)
        Register a complex with an id
        Parameters:
        id - a int.
        object - a Complex object.

      • getComplex

        Complex getComplex​(int id)

        getComplex.

        Parameters:
        id - a int.
        Returns:
        the complex registered with this id, null if it does not exist

      • registerVariableParameterValue

        void registerVariableParameterValue​(int id,
                                    VariableParameterValue object)
        Register a variable parameter value with an id
        Parameters:
        id - a int.
        object - a VariableParameterValue object.

      • getVariableParameterValue

        VariableParameterValue getVariableParameterValue​(int id)

        getVariableParameterValue.

        Parameters:
        id - a int.
        Returns:
        the variable parameter value registered with this id, null if it does not exist

      • clear

        void clear()
        Clear all existing records

      • close

        void close()
        Close cache

      • containsExperiment

        boolean containsExperiment​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsAvailability

        boolean containsAvailability​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsInteraction

        boolean containsInteraction​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsInteractor

        boolean containsInteractor​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsParticipant

        boolean containsParticipant​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsFeature

        boolean containsFeature​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsVariableParameter

        boolean containsVariableParameter​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsComplex

        boolean containsComplex​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsComplexParticipant

        boolean containsComplexParticipant​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • containsComplexFeature

        boolean containsComplexFeature​(int id)
        To know if it contains a specific id
        Parameters:
        id - a int.
        Returns:
        a boolean.

      • registerModelledFeatureLoadedFrom

        ModelledFeature registerModelledFeatureLoadedFrom​(Feature f)

        registerModelledFeatureLoadedFrom.

        Parameters:
        f - : the loaded feature
        Returns:
        the converted and registered modelled feature

      • registerModelledParticipantLoadedFrom

        ModelledEntity registerModelledParticipantLoadedFrom​(Entity f)

        registerModelledParticipantLoadedFrom.

        Parameters:
        f - : the loaded participant
        Returns:
        the converted and registered modelled participant

      • registerComplexLoadedFrom

        Complex registerComplexLoadedFrom​(Interaction f)

        registerComplexLoadedFrom.

        Parameters:
        f - : the loaded interaction
        Returns:
        the converted and registered complex