Package psidev.psi.mi.jami.xml.io.writer.compact

Class CompactXmlModelledBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<ModelledBinaryInteraction>

psidev.psi.mi.jami.xml.io.writer.compact.CompactXmlModelledBinaryWriter

All Implemented Interfaces:

InteractionWriter<ModelledBinaryInteraction>

public class CompactXmlModelledBinaryWriter
extends AbstractCompactXmlWriter<ModelledBinaryInteraction>

Compact PSI-XML writer for modelled binary interactions (no experimental evidences)

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompactXmlModelledBinaryWriter(PsiXmlVersion version)	Constructor for CompactXmlModelledBinaryWriter.
CompactXmlModelledBinaryWriter(PsiXmlVersion version, File file)	Constructor for CompactXmlModelledBinaryWriter.
CompactXmlModelledBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for CompactXmlModelledBinaryWriter.
CompactXmlModelledBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for CompactXmlModelledBinaryWriter.
CompactXmlModelledBinaryWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for CompactXmlModelledBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	registerAvailabilities(ModelledBinaryInteraction interaction)	registerAvailabilities.
protected void	registerExperiment(ModelledBinaryInteraction interaction)	registerExperiment.
protected void	registerInteractionProperties()	registerInteractionProperties.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

close, getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerParticipantInteractor, registerParticipantPoolInteractor, reset, setAvailabilitySet, setAvailabilityWriter, setExperimentSet, setExperimentWriter, setInteractorSet, setInteractorWriter, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactXmlModelledBinaryWriter

public CompactXmlModelledBinaryWriter(PsiXmlVersion version)

Constructor for CompactXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

CompactXmlModelledBinaryWriter

public CompactXmlModelledBinaryWriter(PsiXmlVersion version,
                                      File file)
                               throws IOException,
                                      XMLStreamException

Constructor for CompactXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

CompactXmlModelledBinaryWriter

public CompactXmlModelledBinaryWriter(PsiXmlVersion version,
                                      OutputStream output)
                               throws XMLStreamException

Constructor for CompactXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

CompactXmlModelledBinaryWriter

public CompactXmlModelledBinaryWriter(PsiXmlVersion version,
                                      Writer writer)
                               throws XMLStreamException

Constructor for CompactXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

CompactXmlModelledBinaryWriter

public CompactXmlModelledBinaryWriter(PsiXmlVersion version,
                                      XMLStreamWriter streamWriter,
                                      PsiXmlObjectCache cache)

Constructor for CompactXmlModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

registerAvailabilities

protected void registerAvailabilities(ModelledBinaryInteraction interaction)

registerAvailabilities.

Specified by:

registerAvailabilities in class AbstractCompactXmlWriter<ModelledBinaryInteraction>

Parameters:

interaction - a T object.

registerExperiment

protected void registerExperiment(ModelledBinaryInteraction interaction)

registerExperiment.

Specified by:

registerExperiment in class AbstractCompactXmlWriter<ModelledBinaryInteraction>

Parameters:

interaction - a T object.

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<ModelledBinaryInteraction>

Returns:

a Source object.

registerInteractionProperties

protected void registerInteractionProperties()

registerInteractionProperties.

Overrides:

registerInteractionProperties in class AbstractCompactXmlWriter<ModelledBinaryInteraction>

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<ModelledBinaryInteraction>