Package psidev.psi.mi.jami.xml.io.writer.compact

Class CompactXmlNamedBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<I>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.compact.CompactXmlNamedBinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class CompactXmlNamedBinaryWriter
extends AbstractCompactXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

Compact PSI-XML writer for a mix of named binary interactions

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompactXmlNamedBinaryWriter(PsiXmlVersion version)	Constructor for CompactXmlNamedBinaryWriter.
CompactXmlNamedBinaryWriter(PsiXmlVersion version, File file)	Constructor for CompactXmlNamedBinaryWriter.
CompactXmlNamedBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for CompactXmlNamedBinaryWriter.
CompactXmlNamedBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for CompactXmlNamedBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDelegateWriters()	initialiseDelegateWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter

close, flush, initialiseSubWriters, registerAvailabilities, registerExperiment, reset, setAvailabilitySet, setAvailabilityWriter, setComplexWriter, setDefaultReleaseDate, setDefaultSource, setElementCache, setEvidenceWriter, setExperimentSet, setExperimentWriter, setInteractionSet, setInteractorSet, setInteractorWriter, setLightWriter, setModelledWriter, setSourceWriter, setVersion, setWriteComplexesAsInteractors, write, write, write

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setCurrentInteraction, setCurrentSource, setEntryAnnotations, setInteractionsIterator, setInteractionWriter, setStarted, setSubWritersFactory, start, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactXmlNamedBinaryWriter

public CompactXmlNamedBinaryWriter(PsiXmlVersion version)

Constructor for CompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

CompactXmlNamedBinaryWriter

public CompactXmlNamedBinaryWriter(PsiXmlVersion version,
                                   File file)
                            throws IOException,
                                   XMLStreamException

Constructor for CompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

CompactXmlNamedBinaryWriter

public CompactXmlNamedBinaryWriter(PsiXmlVersion version,
                                   OutputStream output)
                            throws XMLStreamException

Constructor for CompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

CompactXmlNamedBinaryWriter

public CompactXmlNamedBinaryWriter(PsiXmlVersion version,
                                   Writer writer)
                            throws XMLStreamException

Constructor for CompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

Method Detail

initialiseDelegateWriters

protected void initialiseDelegateWriters()

initialiseDelegateWriters.

Specified by:

initialiseDelegateWriters in class AbstractCompactXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>