Package psidev.psi.mi.jami.xml.io.writer.compact

Class LightCompactXmlNamedBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<BinaryInteraction>

psidev.psi.mi.jami.xml.io.writer.compact.LightCompactXmlNamedBinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class LightCompactXmlNamedBinaryWriter
extends AbstractCompactXmlWriter<BinaryInteraction>

Compact PSI-XML writer for light binary interactions (no experimental evidences) having names. Participants, experiments and features are also assumed to have expanded names

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightCompactXmlNamedBinaryWriter(PsiXmlVersion version)	Constructor for LightCompactXmlNamedBinaryWriter.
LightCompactXmlNamedBinaryWriter(PsiXmlVersion version, File file)	Constructor for LightCompactXmlNamedBinaryWriter.
LightCompactXmlNamedBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for LightCompactXmlNamedBinaryWriter.
LightCompactXmlNamedBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for LightCompactXmlNamedBinaryWriter.
LightCompactXmlNamedBinaryWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for LightCompactXmlNamedBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	registerAvailabilities(BinaryInteraction interaction)	registerAvailabilities.
protected void	registerExperiment(BinaryInteraction interaction)	registerExperiment.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

close, getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, reset, setAvailabilitySet, setAvailabilityWriter, setExperimentSet, setExperimentWriter, setInteractorSet, setInteractorWriter, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightCompactXmlNamedBinaryWriter

public LightCompactXmlNamedBinaryWriter(PsiXmlVersion version)

Constructor for LightCompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

LightCompactXmlNamedBinaryWriter

public LightCompactXmlNamedBinaryWriter(PsiXmlVersion version,
                                        File file)
                                 throws IOException,
                                        XMLStreamException

Constructor for LightCompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

LightCompactXmlNamedBinaryWriter

public LightCompactXmlNamedBinaryWriter(PsiXmlVersion version,
                                        OutputStream output)
                                 throws XMLStreamException

Constructor for LightCompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

LightCompactXmlNamedBinaryWriter

public LightCompactXmlNamedBinaryWriter(PsiXmlVersion version,
                                        Writer writer)
                                 throws XMLStreamException

Constructor for LightCompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

LightCompactXmlNamedBinaryWriter

public LightCompactXmlNamedBinaryWriter(PsiXmlVersion version,
                                        XMLStreamWriter streamWriter,
                                        PsiXmlObjectCache cache)

Constructor for LightCompactXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

registerAvailabilities

protected void registerAvailabilities(BinaryInteraction interaction)

registerAvailabilities.

Specified by:

registerAvailabilities in class AbstractCompactXmlWriter<BinaryInteraction>

Parameters:

interaction - a T object.

registerExperiment

protected void registerExperiment(BinaryInteraction interaction)

registerExperiment.

Specified by:

registerExperiment in class AbstractCompactXmlWriter<BinaryInteraction>

Parameters:

interaction - a T object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<BinaryInteraction>