Package psidev.psi.mi.jami.xml.io.writer.compact

Class LightCompactXmlNamedWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<Interaction>

psidev.psi.mi.jami.xml.io.writer.compact.LightCompactXmlNamedWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class LightCompactXmlNamedWriter
extends AbstractCompactXmlWriter<Interaction>

Compact PSI-XML writer for light interactions (no experimental evidences) having names. Participants, experiments and features are also assumed to have expanded names

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightCompactXmlNamedWriter(PsiXmlVersion version)	Constructor for LightCompactXmlNamedWriter.
LightCompactXmlNamedWriter(PsiXmlVersion version, File file)	Constructor for LightCompactXmlNamedWriter.
LightCompactXmlNamedWriter(PsiXmlVersion version, OutputStream output)	Constructor for LightCompactXmlNamedWriter.
LightCompactXmlNamedWriter(PsiXmlVersion version, Writer writer)	Constructor for LightCompactXmlNamedWriter.
LightCompactXmlNamedWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for LightCompactXmlNamedWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	registerAvailabilities(Interaction interaction)	registerAvailabilities.
protected void	registerExperiment(Interaction interaction)	registerExperiment.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

close, getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, reset, setAvailabilitySet, setAvailabilityWriter, setExperimentSet, setExperimentWriter, setInteractorSet, setInteractorWriter, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightCompactXmlNamedWriter

public LightCompactXmlNamedWriter(PsiXmlVersion version)

Constructor for LightCompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

LightCompactXmlNamedWriter

public LightCompactXmlNamedWriter(PsiXmlVersion version,
                                  File file)
                           throws IOException,
                                  XMLStreamException

Constructor for LightCompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

LightCompactXmlNamedWriter

public LightCompactXmlNamedWriter(PsiXmlVersion version,
                                  OutputStream output)
                           throws XMLStreamException

Constructor for LightCompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

LightCompactXmlNamedWriter

public LightCompactXmlNamedWriter(PsiXmlVersion version,
                                  Writer writer)
                           throws XMLStreamException

Constructor for LightCompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

LightCompactXmlNamedWriter

public LightCompactXmlNamedWriter(PsiXmlVersion version,
                                  XMLStreamWriter streamWriter,
                                  PsiXmlObjectCache cache)

Constructor for LightCompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

registerAvailabilities

protected void registerAvailabilities(Interaction interaction)

registerAvailabilities.

Specified by:

registerAvailabilities in class AbstractCompactXmlWriter<Interaction>

Parameters:

interaction - a T object.

registerExperiment

protected void registerExperiment(Interaction interaction)

registerExperiment.

Specified by:

registerExperiment in class AbstractCompactXmlWriter<Interaction>

Parameters:

interaction - a T object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<Interaction>