Package psidev.psi.mi.jami.xml.io.writer.compact.extended

Class CompactXmlBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<I>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.compact.extended.CompactXmlBinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class CompactXmlBinaryWriter
extends AbstractCompactXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

Compact PSI-XML writer for a mix of expanded binary interactions

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompactXmlBinaryWriter(PsiXmlVersion version)	Constructor for CompactXmlBinaryWriter.
CompactXmlBinaryWriter(PsiXmlVersion version, File file)	Constructor for CompactXmlBinaryWriter.
CompactXmlBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for CompactXmlBinaryWriter.
CompactXmlBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for CompactXmlBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseDelegateWriters()	initialiseDelegateWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter

close, flush, initialiseSubWriters, registerAvailabilities, registerExperiment, reset, setAvailabilitySet, setAvailabilityWriter, setComplexWriter, setDefaultReleaseDate, setDefaultSource, setElementCache, setEvidenceWriter, setExperimentSet, setExperimentWriter, setInteractionSet, setInteractorSet, setInteractorWriter, setLightWriter, setModelledWriter, setSourceWriter, setVersion, setWriteComplexesAsInteractors, write, write, write

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setCurrentInteraction, setCurrentSource, setEntryAnnotations, setInteractionsIterator, setInteractionWriter, setStarted, setSubWritersFactory, start, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactXmlBinaryWriter

public CompactXmlBinaryWriter(PsiXmlVersion version)

Constructor for CompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

CompactXmlBinaryWriter

public CompactXmlBinaryWriter(PsiXmlVersion version,
                              File file)
                       throws IOException,
                              XMLStreamException

Constructor for CompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

CompactXmlBinaryWriter

public CompactXmlBinaryWriter(PsiXmlVersion version,
                              OutputStream output)
                       throws XMLStreamException

Constructor for CompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

CompactXmlBinaryWriter

public CompactXmlBinaryWriter(PsiXmlVersion version,
                              Writer writer)
                       throws XMLStreamException

Constructor for CompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

Method Detail

initialiseDelegateWriters

protected void initialiseDelegateWriters()

initialiseDelegateWriters.

Specified by:

initialiseDelegateWriters in class AbstractCompactXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<BinaryInteraction>