Package psidev.psi.mi.jami.xml.io.writer.compact.extended

Class LightCompactXmlBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<BinaryInteraction>

psidev.psi.mi.jami.xml.io.writer.compact.extended.LightCompactXmlBinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class LightCompactXmlBinaryWriter
extends AbstractCompactXmlWriter<BinaryInteraction>

Compact PSI-XML writer for light binary interactions (no experimental evidences)

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightCompactXmlBinaryWriter(PsiXmlVersion version)	Constructor for LightCompactXmlBinaryWriter.
LightCompactXmlBinaryWriter(PsiXmlVersion version, File file)	Constructor for LightCompactXmlBinaryWriter.
LightCompactXmlBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for LightCompactXmlBinaryWriter.
LightCompactXmlBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for LightCompactXmlBinaryWriter.
LightCompactXmlBinaryWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for LightCompactXmlBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	registerAvailabilities(BinaryInteraction interaction)	registerAvailabilities.
protected void	registerExperiment(BinaryInteraction interaction)	registerExperiment.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

close, getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, reset, setAvailabilitySet, setAvailabilityWriter, setExperimentSet, setExperimentWriter, setInteractorSet, setInteractorWriter, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightCompactXmlBinaryWriter

public LightCompactXmlBinaryWriter(PsiXmlVersion version)

Constructor for LightCompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

LightCompactXmlBinaryWriter

public LightCompactXmlBinaryWriter(PsiXmlVersion version,
                                   File file)
                            throws IOException,
                                   XMLStreamException

Constructor for LightCompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

LightCompactXmlBinaryWriter

public LightCompactXmlBinaryWriter(PsiXmlVersion version,
                                   OutputStream output)
                            throws XMLStreamException

Constructor for LightCompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

LightCompactXmlBinaryWriter

public LightCompactXmlBinaryWriter(PsiXmlVersion version,
                                   Writer writer)
                            throws XMLStreamException

Constructor for LightCompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

LightCompactXmlBinaryWriter

public LightCompactXmlBinaryWriter(PsiXmlVersion version,
                                   XMLStreamWriter streamWriter,
                                   PsiXmlObjectCache cache)

Constructor for LightCompactXmlBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

registerAvailabilities

protected void registerAvailabilities(BinaryInteraction interaction)

registerAvailabilities.

Specified by:

registerAvailabilities in class AbstractCompactXmlWriter<BinaryInteraction>

Parameters:

interaction - a T object.

registerExperiment

protected void registerExperiment(BinaryInteraction interaction)

registerExperiment.

Specified by:

registerExperiment in class AbstractCompactXmlWriter<BinaryInteraction>

Parameters:

interaction - a T object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<BinaryInteraction>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<BinaryInteraction>