Package psidev.psi.mi.jami.xml.io.writer.compact.extended

Class LightCompactXmlWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<Interaction>

psidev.psi.mi.jami.xml.io.writer.compact.extended.LightCompactXmlWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class LightCompactXmlWriter
extends AbstractCompactXmlWriter<Interaction>

Compact PSI-XML writer for light interactions (no experimental evidences)

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightCompactXmlWriter(PsiXmlVersion version)	Constructor for LightCompactXmlWriter.
LightCompactXmlWriter(PsiXmlVersion version, File file)	Constructor for LightCompactXmlWriter.
LightCompactXmlWriter(PsiXmlVersion version, OutputStream output)	Constructor for LightCompactXmlWriter.
LightCompactXmlWriter(PsiXmlVersion version, Writer writer)	Constructor for LightCompactXmlWriter.
LightCompactXmlWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for LightCompactXmlWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	registerAvailabilities(Interaction interaction)	registerAvailabilities.
protected void	registerExperiment(Interaction interaction)	registerExperiment.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

close, getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, reset, setAvailabilitySet, setAvailabilityWriter, setExperimentSet, setExperimentWriter, setInteractorSet, setInteractorWriter, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightCompactXmlWriter

public LightCompactXmlWriter(PsiXmlVersion version)

Constructor for LightCompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

LightCompactXmlWriter

public LightCompactXmlWriter(PsiXmlVersion version,
                             File file)
                      throws IOException,
                             XMLStreamException

Constructor for LightCompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

LightCompactXmlWriter

public LightCompactXmlWriter(PsiXmlVersion version,
                             OutputStream output)
                      throws XMLStreamException

Constructor for LightCompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

LightCompactXmlWriter

public LightCompactXmlWriter(PsiXmlVersion version,
                             Writer writer)
                      throws XMLStreamException

Constructor for LightCompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

LightCompactXmlWriter

public LightCompactXmlWriter(PsiXmlVersion version,
                             XMLStreamWriter streamWriter,
                             PsiXmlObjectCache cache)

Constructor for LightCompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

registerAvailabilities

protected void registerAvailabilities(Interaction interaction)

registerAvailabilities.

Specified by:

registerAvailabilities in class AbstractCompactXmlWriter<Interaction>

Parameters:

interaction - a T object.

registerExperiment

protected void registerExperiment(Interaction interaction)

registerExperiment.

Specified by:

registerExperiment in class AbstractCompactXmlWriter<Interaction>

Parameters:

interaction - a T object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<Interaction>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<Interaction>