Package psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Class AbstractXmlOrganismWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlOrganismWriter

All Implemented Interfaces:

PsiXmlElementWriter<Organism>

Direct Known Subclasses:

XmlHostOrganismWriter, XmlOrganismWriter

public abstract class AbstractXmlOrganismWriter
extends Object
implements PsiXmlElementWriter<Organism>

Abstract class forPSI-XML writer for organism

Since:

12/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
AbstractXmlOrganismWriter(XMLStreamWriter writer)	Constructor for AbstractXmlOrganismWriter.

Method Summary

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	getAliasWriter()	Getter for the field aliasWriter.
PsiXmlVariableNameWriter<CvTerm>	getCvWriter()	Getter for the field cvWriter.
protected XMLStreamWriter	getStreamWriter()	Getter for the field streamWriter.
protected abstract void	initialiseCvWriter()	initialiseCvWriter.
void	setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	setCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)	Setter for the field cvWriter.
void	write(Organism object)	write.
protected abstract void	writeOtherProperties(Organism object)	writeOtherProperties.
protected abstract void	writeStartOrganism()	writeStartOrganism.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractXmlOrganismWriter

public AbstractXmlOrganismWriter(XMLStreamWriter writer)

Constructor for AbstractXmlOrganismWriter.

Parameters:

writer - a XMLStreamWriter object.

Method Detail

getAliasWriter

public PsiXmlElementWriter<Alias> getAliasWriter()

Getter for the field aliasWriter.

Returns:

a PsiXmlElementWriter object.

setAliasWriter

public void setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)

Setter for the field aliasWriter.

Parameters:

aliasWriter - a PsiXmlElementWriter object.

getCvWriter

public PsiXmlVariableNameWriter<CvTerm> getCvWriter()

Getter for the field cvWriter.

Returns:

a PsiXmlVariableNameWriter object.

initialiseCvWriter

protected abstract void initialiseCvWriter()

initialiseCvWriter.

setCvWriter

public void setCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)

Setter for the field cvWriter.

Parameters:

cvWriter - a PsiXmlVariableNameWriter object.

write

public void write(Organism object)
           throws MIIOException

write.

Specified by:

write in interface PsiXmlElementWriter<Organism>

Parameters:

object - a T object.

Throws:

MIIOException - if any.

writeOtherProperties

protected abstract void writeOtherProperties(Organism object)
                                      throws XMLStreamException

writeOtherProperties.

Parameters:

object - a Organism object.

Throws:

XMLStreamException - if any.

writeStartOrganism

protected abstract void writeStartOrganism()
                                    throws XMLStreamException

writeStartOrganism.

Throws:

XMLStreamException - if any.

getStreamWriter

protected XMLStreamWriter getStreamWriter()

Getter for the field streamWriter.

Returns:

a XMLStreamWriter object.