Package psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30

Class XmlModelledParticipantWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlModelledParticipantWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30.AbstractXmlModelledParticipantWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30.XmlModelledParticipantWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30.XmlNamedModelledParticipantWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30.XmlModelledParticipantWriter

All Implemented Interfaces:

CompactPsiXmlElementWriter<ModelledParticipant>, PsiXmlElementWriter<ModelledParticipant>, PsiXmlParticipantWriter<ModelledParticipant>

public class XmlModelledParticipantWriter
extends XmlNamedModelledParticipantWriter

Compact XML 3.0 writer for a modelled participant. (ignore all experimental details)

Since:

14/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlModelledParticipantWriter(XMLStreamWriter writer, PsiXmlObjectCache objectIndex)	Constructor for XmlModelledParticipantWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseBiologicalRoleWriter()	initialiseBiologicalRoleWriter.
protected void	initialiseFeatureWriter()	initialiseFeatureWriter.
protected void	initialiseInteractorWriter()	initialiseInteractorWriter.
protected void	initialiseParticipantCandidateWriter()	initialiseParticipantCandidateWriter.
protected void	initialiseXrefWriter()	initialiseXrefWriter.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30.XmlNamedModelledParticipantWriter

writeNames

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30.XmlModelledParticipantWriter

writeMolecule

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30.AbstractXmlModelledParticipantWriter

getParticipantCandidateWriter, getStoichiometryWriter, setParticipantCandidateWriter, setStoichiometryWriter, writeConfidences, writeExperimentalInteractor, writeExperimentalPreparations, writeExperimentalRoles, writeHostOrganisms, writeOtherAttributes, writeParameters, writeParticipantIdentificationMethods, writeParticipantPool, writeStoichiometry

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantWriter

getAliasWriter, getAttributeWriter, getBiologicalRoleWriter, getFeatureWriter, getInteractorWriter, getObjectIndex, getStreamWriter, getVersion, getXrefWriter, setAliasWriter, setAttributeWriter, setBiologicalRoleWriter, setComplexAsInteractor, setFeatureWriter, setInteractorWriter, setXrefWriter, write, writeAttributes, writeBiologicalRole, writeComplexAsInteractor, writeFeatures, writeInteractor, writeMoleculeDescription, writeMoleculeRef, writeParticipant, writeXref, writeXrefFromParticipantXrefs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter

write

Constructor Detail

XmlModelledParticipantWriter

public XmlModelledParticipantWriter(XMLStreamWriter writer,
                                    PsiXmlObjectCache objectIndex)

Constructor for XmlModelledParticipantWriter.

Parameters:

writer - a XMLStreamWriter object.

objectIndex - a PsiXmlObjectCache object.

Method Detail

initialiseXrefWriter

protected void initialiseXrefWriter()

initialiseXrefWriter.

Overrides:

initialiseXrefWriter in class AbstractXmlModelledParticipantWriter

initialiseFeatureWriter

protected void initialiseFeatureWriter()

initialiseFeatureWriter.

Overrides:

initialiseFeatureWriter in class AbstractXmlModelledParticipantWriter

initialiseBiologicalRoleWriter

protected void initialiseBiologicalRoleWriter()

initialiseBiologicalRoleWriter.

Overrides:

initialiseBiologicalRoleWriter in class AbstractXmlModelledParticipantWriter

initialiseInteractorWriter

protected void initialiseInteractorWriter()

initialiseInteractorWriter.

Overrides:

initialiseInteractorWriter in class AbstractXmlModelledParticipantWriter

initialiseParticipantCandidateWriter

protected void initialiseParticipantCandidateWriter()

initialiseParticipantCandidateWriter.

Overrides:

initialiseParticipantCandidateWriter in class XmlModelledParticipantWriter