java.lang.Object
- psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
- - psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlInteractor
  - - psidev.psi.mi.jami.xml.model.extension.xml254.DefaultXmlInteractor
    - - psidev.psi.mi.jami.xml.model.extension.xml254.XmlInteractorPool

All Implemented Interfaces:

com.sun.xml.bind.Locatable, Iterable<Interactor>, Collection<Interactor>, FileSourceContext, Interactor, InteractorPool, ExtendedPsiXmlInteractor
```
public class XmlInteractorPool
extends DefaultXmlInteractor
implements InteractorPool
```
Xml implementation for InteractorSet
Since:
```
24/07/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary
- Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlInteractor
  AbstractXmlInteractor.JAXBAttributeWrapper
- Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
  AbstractBaseXmlInteractor.AbstractJAXBAttributeWrapper

Field Summary
- Fields inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
  locator
- Fields inherited from interface psidev.psi.mi.jami.model.Interactor
  UNKNOWN_INTERACTOR, UNKNOWN_INTERACTOR_MI
- Fields inherited from interface psidev.psi.mi.jami.model.InteractorPool
  CANDIDATE_SET, CANDIDATE_SET_MI, DEFINED_SET, DEFINED_SET_MI, MOLECULE_SET, MOLECULE_SET_MI, OPEN_SET, OPEN_SET_MI

Constructor Summary

Constructors
Constructor	Description
`XmlInteractorPool()`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName, CvTerm type)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName, CvTerm type, Organism organism)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName, CvTerm type, Organism organism, Xref uniqueId)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName, CvTerm type, Xref uniqueId)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName, Organism organism)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName, Organism organism, Xref uniqueId)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, String fullName, Xref uniqueId)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, CvTerm type)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, CvTerm type, Organism organism)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, CvTerm type, Organism organism, Xref uniqueId)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, CvTerm type, Xref uniqueId)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, Organism organism)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, Organism organism, Xref uniqueId)`	Constructor for XmlInteractorPool.
`XmlInteractorPool(String name, Xref uniqueId)`	Constructor for XmlInteractorPool.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`add(Interactor interactor)`	add.
`boolean`	`addAll(Collection<? extends Interactor> interactors)`
`void`	`clear()`	clear.
`boolean`	`contains(Object o)`
`boolean`	`containsAll(Collection<?> objects)`
`protected void`	`createDefaultInteractorType()`	createDefaultInteractorType.
`protected void`	`initialiseInteractorCandidatesSet()`	initialiseInteractorCandidatesSet.
`protected void`	`initialiseInteractorCandidatesSetWith(Set<Interactor> interactorCandidates)`	initialiseInteractorCandidatesSetWith.
`boolean`	`isEmpty()`	isEmpty.
`Iterator<Interactor>`	`iterator()`	iterator.
`boolean`	`remove(Object o)`
`boolean`	`removeAll(Collection<?> objects)`
`boolean`	`retainAll(Collection<?> objects)`
`int`	`size()`	size.
`Object[]`	`toArray()`	toArray.
`<T> T[]`	`toArray(T[] ts)`	toArray.
`String`	`toString()`	toString

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlInteractor
initialiseAnnotationWrapper, initialiseNamesContainer, initialiseXrefContainer, setJAXBAttributeWrapper, setJAXBId, setJAXBInteractorType, setJAXBNames, setJAXBOrganism, setJAXBXref, setSequence

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
getAliases, getAnnotations, getChecksums, getFullName, getId, getIdentifiers, getInteractorType, getNamesContainer, getOrganism, getPreferredIdentifier, getPreferredName, getSequence, getShortName, getSourceLocator, getXrefs, setFullName, setId, setInteractorType, setJAXBAttributeWrapper, setJAXBInteractorType, setJAXBNames, setJAXBOrganism, setNamesContainer, setOrganism, setShortName, setSourceLocation, setSourceLocator, setXrefContainer, sourceLocation

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection
equals, hashCode, parallelStream, removeIf, spliterator, stream, toArray

Methods inherited from interface psidev.psi.mi.jami.model.Interactor
getAliases, getAnnotations, getChecksums, getFullName, getIdentifiers, getInteractorType, getOrganism, getPreferredIdentifier, getPreferredName, getShortName, getXrefs, setFullName, setInteractorType, setOrganism, setShortName

Methods inherited from interface java.lang.Iterable
forEach

- Constructor Detail
  - XmlInteractorPool
```
public XmlInteractorPool()
```
    Constructor for XmlInteractorPool.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         CvTerm type)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    type - a CvTerm object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName,
                         CvTerm type)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
    
    type - a CvTerm object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         CvTerm type,
                         Organism organism)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    type - a CvTerm object.
    
    organism - a Organism object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName,
                         CvTerm type,
                         Organism organism)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
    
    type - a CvTerm object.
    
    organism - a Organism object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         CvTerm type,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    type - a CvTerm object.
    
    uniqueId - a Xref object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName,
                         CvTerm type,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
    
    type - a CvTerm object.
    
    uniqueId - a Xref object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         CvTerm type,
                         Organism organism,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    type - a CvTerm object.
    
    organism - a Organism object.
    
    uniqueId - a Xref object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName,
                         CvTerm type,
                         Organism organism,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
    
    type - a CvTerm object.
    
    organism - a Organism object.
    
    uniqueId - a Xref object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         Organism organism)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    organism - a Organism object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName,
                         Organism organism)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
    
    organism - a Organism object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    uniqueId - a Xref object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
    
    uniqueId - a Xref object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         Organism organism,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    organism - a Organism object.
    
    uniqueId - a Xref object.
  - XmlInteractorPool
```
public XmlInteractorPool(String name,
                         String fullName,
                         Organism organism,
                         Xref uniqueId)
```
    Constructor for XmlInteractorPool.
    
    Parameters:
    
    name - a String object.
    
    fullName - a String object.
    
    organism - a Organism object.
    
    uniqueId - a Xref object.
- Method Detail
  - initialiseInteractorCandidatesSet
```
protected void initialiseInteractorCandidatesSet()
```
    initialiseInteractorCandidatesSet.
  - initialiseInteractorCandidatesSetWith
```
protected void initialiseInteractorCandidatesSetWith(Set<Interactor> interactorCandidates)
```
    initialiseInteractorCandidatesSetWith.
    
    Parameters:
    
    interactorCandidates - a Set object.
  - size
```
public int size()
```
    size.
    
    Specified by:
    
    size in interface Collection<Interactor>
    
    Returns:
    
    a int.
  - isEmpty
```
public boolean isEmpty()
```
    isEmpty.
    
    Specified by:
    
    isEmpty in interface Collection<Interactor>
    
    Returns:
    
    a boolean.
  - contains
```
public boolean contains(Object o)
```
    Specified by:
    
    contains in interface Collection<Interactor>
  - iterator
```
public Iterator<Interactor> iterator()
```
    iterator.
    
    Specified by:
    
    iterator in interface Collection<Interactor>
    
    Specified by:
    
    iterator in interface Iterable<Interactor>
    
    Returns:
    
    a Iterator object.
  - toArray
```
public Object[] toArray()
```
    toArray.
    
    Specified by:
    
    toArray in interface Collection<Interactor>
    
    Returns:
    
    an array of Object objects.
  - toArray
```
public <T> T[] toArray(T[] ts)
```
    toArray.
    
    Specified by:
    
    toArray in interface Collection<Interactor>
    
    Type Parameters:
    
    T - a T object.
    
    Parameters:
    
    ts - an array of T objects.
    
    Returns:
    
    an array of T objects.
  - add
```
public boolean add(Interactor interactor)
```
    add.
    
    Specified by:
    
    add in interface Collection<Interactor>
    
    Parameters:
    
    interactor - a Interactor object.
    
    Returns:
    
    a boolean.
  - remove
```
public boolean remove(Object o)
```
    Specified by:
    
    remove in interface Collection<Interactor>
  - containsAll
```
public boolean containsAll(Collection<?> objects)
```
    Specified by:
    
    containsAll in interface Collection<Interactor>
  - addAll
```
public boolean addAll(Collection<? extends Interactor> interactors)
```
    Specified by:
    
    addAll in interface Collection<Interactor>
  - retainAll
```
public boolean retainAll(Collection<?> objects)
```
    Specified by:
    
    retainAll in interface Collection<Interactor>
  - removeAll
```
public boolean removeAll(Collection<?> objects)
```
    Specified by:
    
    removeAll in interface Collection<Interactor>
  - clear
```
public void clear()
```
    clear.
    
    Specified by:
    
    clear in interface Collection<Interactor>
  - toString
```
public String toString()
```
    toString
    
    Specified by:
    
    toString in interface FileSourceContext
    
    Overrides:
    
    toString in class AbstractBaseXmlInteractor
    
    Returns:
    
    the file source context as a String. If the source locator is not null, it should give the source locator properties
  - createDefaultInteractorType
```
protected void createDefaultInteractorType()
```
    createDefaultInteractorType.
    
    Overrides:
    
    createDefaultInteractorType in class AbstractXmlInteractor

Class XmlInteractorPool

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlInteractor

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor

Fields inherited from interface psidev.psi.mi.jami.model.Interactor

Fields inherited from interface psidev.psi.mi.jami.model.InteractorPool

Constructor Summary

Method Summary

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlInteractor

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor

Methods inherited from class java.lang.Object

Methods inherited from interface java.util.Collection

Methods inherited from interface psidev.psi.mi.jami.model.Interactor

Methods inherited from interface java.lang.Iterable

Constructor Detail

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

XmlInteractorPool

Method Detail

initialiseInteractorCandidatesSet

initialiseInteractorCandidatesSetWith

size

isEmpty

contains

iterator

toArray

toArray

add

remove

containsAll

addAll

retainAll

removeAll

clear

toString

createDefaultInteractorType