Package psidev.psi.mi.jami.binary.expansion

Class AbstractMatrixExpansion<T extends Interaction,B extends BinaryInteraction>

java.lang.Object

psidev.psi.mi.jami.binary.expansion.AbstractComplexExpansionMethod<T,B>

psidev.psi.mi.jami.binary.expansion.AbstractMatrixExpansion<T,B>

All Implemented Interfaces:

ComplexExpansionMethod<T,B>

Direct Known Subclasses:

InteractionEvidenceMatrixExpansion, MatrixExpansion, ModelledInteractionMatrixExpansion

public abstract class AbstractMatrixExpansion<T extends Interaction,B extends BinaryInteraction>
extends AbstractComplexExpansionMethod<T,B>

Abstract class for Matrix expansion

Since:

19/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.binary.expansion.ComplexExpansionMethod

BIPARTITE, BIPARTITE_EXPANSION, BIPARTITE_EXPANSION_MI, MATRIX, MATRIX_EXPANSION, MATRIX_EXPANSION_MI, SPOKE, SPOKE_EXPANSION, SPOKE_EXPANSION_MI

Constructor Summary

Constructors

Constructor	Description
AbstractMatrixExpansion()	Constructor for AbstractMatrixExpansion.

Method Summary

Modifier and Type	Method	Description
protected Collection<B>	collectBinaryInteractionsFromNary(T interaction)	collectBinaryInteractionsFromNary
protected abstract <P extends Participant> B	createBinaryInteraction(T interaction, P c1, P c2)	createBinaryInteraction
protected abstract <P extends Participant> P[]	createParticipantsArray(T interaction)	createParticipantsArray

Methods inherited from class psidev.psi.mi.jami.binary.expansion.AbstractComplexExpansionMethod

createBinaryInteractionWrappersFrom, createNewSelfBinaryInteractionsFrom, expand, findInteractionCategory, getBinaryInteractionFactory, getMethod, isInteractionExpandable, setBinaryInteractionFactory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractMatrixExpansion

public AbstractMatrixExpansion()

Constructor for AbstractMatrixExpansion.

Method Detail

collectBinaryInteractionsFromNary

protected Collection<B> collectBinaryInteractionsFromNary(T interaction)

collectBinaryInteractionsFromNary

Specified by:

collectBinaryInteractionsFromNary in class AbstractComplexExpansionMethod<T extends Interaction,B extends BinaryInteraction>

Parameters:

interaction - : the interaction to expand

Returns:

the collection of binary interaction generated from this n-ary interaction

createBinaryInteraction

protected abstract <P extends Participant> B createBinaryInteraction(T interaction,
                                                                     P c1,
                                                                     P c2)

createBinaryInteraction

Type Parameters:

P - a P object.

Parameters:

interaction - : the interaction to expand

c1 - : participant A

c2 - : participant B

Returns:

the binary interaction

createParticipantsArray

protected abstract <P extends Participant> P[] createParticipantsArray(T interaction)

createParticipantsArray

Type Parameters:

P - a P object.

Parameters:

interaction - : the interaction to expand

Returns:

the array of participants involved in this interaction