java.lang.Object
- psidev.psi.mi.jami.model.impl.AbstractInteraction<T>
- - psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction<ModelledParticipant>
  - - psidev.psi.mi.jami.binary.impl.DefaultModelledBinaryInteraction

All Implemented Interfaces:

BinaryInteraction<ModelledParticipant>, ModelledBinaryInteraction, Interaction<ModelledParticipant>, ModelledInteraction

Direct Known Subclasses:

DefaultNamedModelledBinaryInteraction, MitabModelledBinaryInteraction
```
public class DefaultModelledBinaryInteraction
extends AbstractBinaryInteraction<ModelledParticipant>
implements ModelledBinaryInteraction
```
Default implementation for ModelledBinaryInteraction
Since:
```
04/06/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary
- Fields inherited from interface psidev.psi.mi.jami.model.ModelledInteraction
  ECO, ECO_MI

Constructor Summary

Constructors
Constructor	Description
`DefaultModelledBinaryInteraction()`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName, CvTerm type)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName, CvTerm type, CvTerm complexExpansion)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName, CvTerm type, ModelledParticipant participantA, ModelledParticipant participantB)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName, CvTerm type, ModelledParticipant participantA, ModelledParticipant participantB, CvTerm complexExpansion)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName, CvTerm type, ModelledParticipant participantA, ModelledParticipant participantB, CvTerm complexExpansion, CvTerm causalRegulatoryMechanism)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName, ModelledParticipant participantA, ModelledParticipant participantB)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(String shortName, ModelledParticipant participantA, ModelledParticipant participantB, CvTerm complexExpansion)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(CvTerm complexExpansion)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(ModelledParticipant participantA, ModelledParticipant participantB)`	Constructor for DefaultModelledBinaryInteraction.
`DefaultModelledBinaryInteraction(ModelledParticipant participantA, ModelledParticipant participantB, CvTerm complexExpansion)`	Constructor for DefaultModelledBinaryInteraction.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Collection<CooperativeEffect>`	`getCooperativeEffects()`	Getter for the field `cooperativeEffects`.
`CvTerm`	`getEvidenceType()`	getEvidenceType
`Collection<InteractionEvidence>`	`getInteractionEvidences()`	Getter for the field `interactionEvidences`.
`Collection<ModelledConfidence>`	`getModelledConfidences()`	Getter for the field `modelledConfidences`.
`Collection<ModelledParameter>`	`getModelledParameters()`	Getter for the field `modelledParameters`.
`Source`	`getSource()`	Getter for the field `source`.
`protected void`	`initialiseCooperativeEffects()`	initialiseCooperativeEffects
`protected void`	`initialiseCooperativeEffectsWith(Collection<CooperativeEffect> cooperativeEffects)`	initialiseCooperativeEffectsWith
`protected void`	`initialiseInteractionEvidences()`	initialiseInteractionEvidences
`protected void`	`initialiseInteractionEvidencesWith(Collection<InteractionEvidence> evidences)`	initialiseInteractionEvidencesWith
`protected void`	`initialiseModelledConfidences()`	initialiseModelledConfidences
`protected void`	`initialiseModelledConfidencesWith(Collection<ModelledConfidence> confidences)`	initialiseModelledConfidencesWith
`protected void`	`initialiseModelledParameters()`	initialiseModelledParameters
`protected void`	`initialiseModelledParametersWith(Collection<ModelledParameter> parameters)`	initialiseModelledParametersWith
`void`	`setEvidenceType(CvTerm eco)`	Sets the evidence type
`void`	`setSource(Source source)`	Sets the source reporting the interaction.

Methods inherited from class psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction
addAllParticipants, addParticipant, getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, getParticipants, removeAllParticipants, removeParticipant, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.binary.BinaryInteraction
getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB

Methods inherited from interface psidev.psi.mi.jami.model.Interaction
addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Constructor Detail

DefaultModelledBinaryInteraction
```
public DefaultModelledBinaryInteraction()
```
Constructor for DefaultModelledBinaryInteraction.

DefaultModelledBinaryInteraction
```
public DefaultModelledBinaryInteraction(String shortName)
```
Constructor for DefaultModelledBinaryInteraction.

Parameters:

shortName - a String object.