Package psidev.psi.mi.jami.binary.impl

Class DefaultNamedBinaryInteraction

java.lang.Object

psidev.psi.mi.jami.model.impl.AbstractInteraction<T>

psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction<Participant>

psidev.psi.mi.jami.binary.impl.DefaultBinaryInteraction

psidev.psi.mi.jami.binary.impl.DefaultNamedBinaryInteraction

All Implemented Interfaces:

BinaryInteraction<Participant>, Interaction<Participant>, NamedInteraction<Participant>

public class DefaultNamedBinaryInteraction
extends DefaultBinaryInteraction
implements NamedInteraction<Participant>

Default implementation of a named binary interaction

Since:

13/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
DefaultNamedBinaryInteraction()	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, CvTerm type)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, CvTerm type, CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, Participant participantA, Participant participantB)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(Participant participantA, Participant participantB)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.

Method Summary

Modifier and Type	Method	Description
Collection<Alias>	getAliases()	Getter for the field aliases.
String	getFullName()	Getter for the field fullName.
protected void	initialiseAliases()	initialiseAliases
protected void	initialiseAliasesWith(Collection<Alias> aliases)	initialiseAliasesWith
void	setFullName(String fullName)	Sets the full name of the interaction

Methods inherited from class psidev.psi.mi.jami.binary.impl.AbstractBinaryInteraction

addAllParticipants, addParticipant, getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, getParticipants, removeAllParticipants, removeParticipant, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB, toString

Methods inherited from class psidev.psi.mi.jami.model.impl.AbstractInteraction

clearPropertiesLinkedToChecksums, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getRigid, getShortName, getUpdatedDate, getXrefs, initialiseAnnotations, initialiseAnnotationsWith, initialiseChecksums, initialiseChecksumWith, initialiseIdentifiers, initialiseIdentifiersWith, initialiseParticipants, initialiseParticipantsWith, initialiseXrefs, initialiseXrefsWith, processAddedChecksumEvent, processRemovedChecksumEvent, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Constructor Detail

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction()

Constructor for DefaultNamedBinaryInteraction.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(String shortName)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

shortName - a String object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(String shortName,
                                     CvTerm type)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(Participant participantA,
                                     Participant participantB)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

participantA - a Participant object.

participantB - a Participant object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(String shortName,
                                     Participant participantA,
                                     Participant participantB)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

shortName - a String object.

participantA - a Participant object.

participantB - a Participant object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(String shortName,
                                     CvTerm type,
                                     Participant participantA,
                                     Participant participantB)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

participantA - a Participant object.

participantB - a Participant object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(CvTerm complexExpansion)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

complexExpansion - a CvTerm object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(String shortName,
                                     CvTerm type,
                                     CvTerm complexExpansion)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

complexExpansion - a CvTerm object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(Participant participantA,
                                     Participant participantB,
                                     CvTerm complexExpansion)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

participantA - a Participant object.

participantB - a Participant object.

complexExpansion - a CvTerm object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(String shortName,
                                     Participant participantA,
                                     Participant participantB,
                                     CvTerm complexExpansion)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

shortName - a String object.

participantA - a Participant object.

participantB - a Participant object.

complexExpansion - a CvTerm object.

DefaultNamedBinaryInteraction

public DefaultNamedBinaryInteraction(String shortName,
                                     CvTerm type,
                                     Participant participantA,
                                     Participant participantB,
                                     CvTerm complexExpansion)

Constructor for DefaultNamedBinaryInteraction.

Parameters:

shortName - a String object.

type - a CvTerm object.

participantA - a Participant object.

participantB - a Participant object.

complexExpansion - a CvTerm object.

Method Detail

initialiseAliases

protected void initialiseAliases()

initialiseAliases

initialiseAliasesWith

protected void initialiseAliasesWith(Collection<Alias> aliases)

initialiseAliasesWith

Parameters:

aliases - a Collection object.

getFullName

public String getFullName()

Getter for the field fullName.

Specified by:

getFullName in interface NamedInteraction<Participant>

Returns:

a String object.

setFullName

public void setFullName(String fullName)

Sets the full name of the interaction

Specified by:

setFullName in interface NamedInteraction<Participant>

Parameters:

fullName - : full name

getAliases

public Collection<Alias> getAliases()

Getter for the field aliases.

Specified by:

getAliases in interface NamedInteraction<Participant>

Returns:

a Collection object.