Package psidev.psi.mi.jami.binary.impl

Class ModelledBinaryInteractionWrapper

java.lang.Object

psidev.psi.mi.jami.binary.impl.AbstractBinaryInteractionWrapper<ModelledInteraction,ModelledParticipant>

psidev.psi.mi.jami.binary.impl.ModelledBinaryInteractionWrapper

All Implemented Interfaces:

BinaryInteraction<ModelledParticipant>, ModelledBinaryInteraction, Interaction<ModelledParticipant>, ModelledInteraction

public class ModelledBinaryInteractionWrapper
extends AbstractBinaryInteractionWrapper<ModelledInteraction,ModelledParticipant>
implements ModelledBinaryInteraction

A wrapper for ModelledInteraction which contains two participants

Since:

05/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.ModelledInteraction

ECO, ECO_MI

Constructor Summary

Constructors

Constructor	Description
ModelledBinaryInteractionWrapper(ModelledInteraction interaction)	Constructor for ModelledBinaryInteractionWrapper.
ModelledBinaryInteractionWrapper(ModelledInteraction interaction, CvTerm complexExpansion)	Constructor for ModelledBinaryInteractionWrapper.

Method Summary

Modifier and Type	Method	Description
Collection<CooperativeEffect>	getCooperativeEffects()	getCooperativeEffects
CvTerm	getEvidenceType()	getEvidenceType
Collection<InteractionEvidence>	getInteractionEvidences()	getInteractionEvidences
Collection<ModelledConfidence>	getModelledConfidences()	getModelledConfidences
Collection<ModelledParameter>	getModelledParameters()	getModelledParameters
Source	getSource()	getSource
void	setEvidenceType(CvTerm eco)	Sets the evidence type
void	setSource(Source source)	Sets the source reporting the interaction.

Methods inherited from class psidev.psi.mi.jami.binary.impl.AbstractBinaryInteractionWrapper

addAllParticipants, addParticipant, getAnnotations, getCausalRegulatoryMechanism, getChecksums, getComplexExpansion, getCreatedDate, getIdentifiers, getInteractionType, getParticipantA, getParticipantB, getParticipants, getRigid, getShortName, getUpdatedDate, getWrappedInteraction, getXrefs, removeAllParticipants, removeParticipant, setCausalRegulatoryMechanism, setComplexExpansion, setCreatedDate, setInteractionType, setParticipantA, setParticipantB, setRigid, setShortName, setUpdatedDate, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.binary.BinaryInteraction

getCausalRegulatoryMechanism, getComplexExpansion, getParticipantA, getParticipantB, setCausalRegulatoryMechanism, setComplexExpansion, setParticipantA, setParticipantB

Methods inherited from interface psidev.psi.mi.jami.model.Interaction

addAllParticipants, addParticipant, getAnnotations, getChecksums, getCreatedDate, getIdentifiers, getInteractionType, getParticipants, getRigid, getShortName, getUpdatedDate, getXrefs, removeAllParticipants, removeParticipant, setCreatedDate, setInteractionType, setRigid, setShortName, setUpdatedDate

Constructor Detail

ModelledBinaryInteractionWrapper

public ModelledBinaryInteractionWrapper(ModelledInteraction interaction)

Constructor for ModelledBinaryInteractionWrapper.

Parameters:

interaction - a ModelledInteraction object.

ModelledBinaryInteractionWrapper

public ModelledBinaryInteractionWrapper(ModelledInteraction interaction,
                                        CvTerm complexExpansion)

Constructor for ModelledBinaryInteractionWrapper.

Parameters:

interaction - a ModelledInteraction object.

complexExpansion - a CvTerm object.

Method Detail

getInteractionEvidences

public Collection<InteractionEvidence> getInteractionEvidences()

getInteractionEvidences

Specified by:

getInteractionEvidences in interface ModelledInteraction

Returns:

a Collection object.

getSource

public Source getSource()

getSource

Specified by:

getSource in interface ModelledInteraction

Returns:

a Source object.

setSource

public void setSource(Source source)

Sets the source reporting the interaction.

Specified by:

setSource in interface ModelledInteraction

Parameters:

source - : source for this interaction

getEvidenceType

public CvTerm getEvidenceType()

getEvidenceType

Specified by:

getEvidenceType in interface ModelledInteraction

Returns:

a CvTerm object.

setEvidenceType

public void setEvidenceType(CvTerm eco)

Sets the evidence type

Specified by:

setEvidenceType in interface ModelledInteraction

Parameters:

eco - : the evidence type

getModelledConfidences

public Collection<ModelledConfidence> getModelledConfidences()

getModelledConfidences

Specified by:

getModelledConfidences in interface ModelledInteraction

Returns:

a Collection object.

getModelledParameters

public Collection<ModelledParameter> getModelledParameters()

getModelledParameters

Specified by:

getModelledParameters in interface ModelledInteraction

Returns:

a Collection object.

getCooperativeEffects

public Collection<CooperativeEffect> getCooperativeEffects()

getCooperativeEffects

Specified by:

getCooperativeEffects in interface ModelledInteraction

Returns:

a Collection object.