Package psidev.psi.mi.jami.bridges.fetcher

Interface GeneFetcher

All Superinterfaces:

InteractorFetcher<Gene>

All Known Implementing Classes:

CachedUniprotGeneFetcher, FailingGeneFetcher, MockGeneFetcher, UniprotGeneFetcher

public interface GeneFetcher
extends InteractorFetcher<Gene>

A fetcher for genes.

Since:

08/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Method Summary

Modifier and Type	Method	Description
Collection<Gene>	fetchByIdentifier(String identifier, int taxID)	fetchByIdentifier.
Collection<Gene>	fetchByIdentifiers(Collection<String> identifiers, int taxID)	fetchByIdentifiers.

Methods inherited from interface psidev.psi.mi.jami.bridges.fetcher.InteractorFetcher

fetchByIdentifier, fetchByIdentifiers

Method Detail

fetchByIdentifier

Collection<Gene> fetchByIdentifier(String identifier,
                                   int taxID)
                            throws BridgeFailedException

fetchByIdentifier.

Parameters:

identifier - The identifier of the gene

taxID - The organism the gene is from.

Returns:

The genes matching the search terms.

Throws:

BridgeFailedException - if any.

fetchByIdentifiers

Collection<Gene> fetchByIdentifiers(Collection<String> identifiers,
                                    int taxID)
                             throws BridgeFailedException

fetchByIdentifiers.

Parameters:

identifiers - The identifiers of the gene

taxID - The organism the gene is from.

Returns:

The genes matching the search terms.

Throws:

BridgeFailedException - if any.